Gene : Medtr5g005050 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR30544//PTHR30544:SF2 - 23S RRNA METHYLTRANSFERASE Description:  23S rRNA m2A2503 methyltransferase
Genomic Order:  37 Name:  ? Medtr5g005050
Secondary Identifier:  ? PAC:31091578
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g005050 0.5kb upstream 0.5kb upstream 3211 true chr5: 304158-307368 Medicago truncatula
Medtr5g005050 0.5kb upstream 0.5kb upstream 500 false chr5: 304158-304657 Medicago truncatula
Medtr5g005050 0.5kb downstream 0.5kb downstream 3211 true chr5: 304658-307868 Medicago truncatula
Medtr5g005050 0.5kb downstream 0.5kb downstream 500 false chr5: 307369-307868 Medicago truncatula
Medtr5g005050 1.0kb upstream 1.0kb upstream 3711 true chr5: 303658-307368 Medicago truncatula
Medtr5g005050 1.0kb upstream 1.0kb upstream 1000 false chr5: 303658-304657 Medicago truncatula
Medtr5g005050 1.0kb downstream 1.0kb downstream 3711 true chr5: 304658-308368 Medicago truncatula
Medtr5g005050 1.0kb downstream 1.0kb downstream 1000 false chr5: 307369-308368 Medicago truncatula
Medtr5g005050 2.0kb upstream 2.0kb upstream 4711 true chr5: 302658-307368 Medicago truncatula
Medtr5g005050 2.0kb upstream 2.0kb upstream 2000 false chr5: 302658-304657 Medicago truncatula
Medtr5g005050 2.0kb downstream 2.0kb downstream 4711 true chr5: 304658-309368 Medicago truncatula
Medtr5g005050 2.0kb downstream 2.0kb downstream 2000 false chr5: 307369-309368 Medicago truncatula
Medtr5g005050 5.0kb upstream 5.0kb upstream 7711 true chr5: 299658-307368 Medicago truncatula
Medtr5g005050 5.0kb upstream 5.0kb upstream 5000 false chr5: 299658-304657 Medicago truncatula
Medtr5g005050 5.0kb downstream 5.0kb downstream 7711 true chr5: 304658-312368 Medicago truncatula
Medtr5g005050 5.0kb downstream 5.0kb downstream 5000 false chr5: 307369-312368 Medicago truncatula
Medtr5g005050 10.0kb upstream 10.0kb upstream 12711 true chr5: 294658-307368 Medicago truncatula
Medtr5g005050 10.0kb upstream 10.0kb upstream 10000 false chr5: 294658-304657 Medicago truncatula
Medtr5g005050 10.0kb downstream 10.0kb downstream 12711 true chr5: 304658-317368 Medicago truncatula
Medtr5g005050 10.0kb downstream 10.0kb downstream 10000 false chr5: 307369-317368 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301797 5265 Fabidae View MSA
124068873 5270 Rosid View MSA
123737735 5271 Pentapetalae View MSA
122788749 5272 Eudicot View MSA
122042435 5273 Angiosperm View MSA
123429187 5275 Viridiplantae View MSA
121346752 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.497       Low
cufflinks 4.202        
cufflinks 4.677       High
cufflinks 2.471        
cufflinks 4.381        
cufflinks 1.564       Low
cufflinks 2.222        
cufflinks 4.672       High
cufflinks 2.098        

0 Strain