Gene : Medtr4g130940 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG1864 - Ubiquitin-specific protease Description:  ubiquitin carboxyl-terminal hydrolase
Genomic Order:  7012 Name:  ? Medtr4g130940
Secondary Identifier:  ? PAC:31109866
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g130940 0.5kb upstream 0.5kb upstream 8261 true chr4: 54593972-54602232 Medicago truncatula
Medtr4g130940 0.5kb upstream 0.5kb upstream 500 false chr4: 54601733-54602232 Medicago truncatula
Medtr4g130940 0.5kb downstream 0.5kb downstream 8261 true chr4: 54593472-54601732 Medicago truncatula
Medtr4g130940 0.5kb downstream 0.5kb downstream 500 false chr4: 54593472-54593971 Medicago truncatula
Medtr4g130940 1.0kb upstream 1.0kb upstream 8761 true chr4: 54593972-54602732 Medicago truncatula
Medtr4g130940 1.0kb upstream 1.0kb upstream 1000 false chr4: 54601733-54602732 Medicago truncatula
Medtr4g130940 1.0kb downstream 1.0kb downstream 8761 true chr4: 54592972-54601732 Medicago truncatula
Medtr4g130940 1.0kb downstream 1.0kb downstream 1000 false chr4: 54592972-54593971 Medicago truncatula
Medtr4g130940 2.0kb upstream 2.0kb upstream 9761 true chr4: 54593972-54603732 Medicago truncatula
Medtr4g130940 2.0kb upstream 2.0kb upstream 2000 false chr4: 54601733-54603732 Medicago truncatula
Medtr4g130940 2.0kb downstream 2.0kb downstream 9761 true chr4: 54591972-54601732 Medicago truncatula
Medtr4g130940 2.0kb downstream 2.0kb downstream 2000 false chr4: 54591972-54593971 Medicago truncatula
Medtr4g130940 5.0kb upstream 5.0kb upstream 12761 true chr4: 54593972-54606732 Medicago truncatula
Medtr4g130940 5.0kb upstream 5.0kb upstream 5000 false chr4: 54601733-54606732 Medicago truncatula
Medtr4g130940 5.0kb downstream 5.0kb downstream 12761 true chr4: 54588972-54601732 Medicago truncatula
Medtr4g130940 5.0kb downstream 5.0kb downstream 5000 false chr4: 54588972-54593971 Medicago truncatula
Medtr4g130940 10.0kb upstream 10.0kb upstream 17761 true chr4: 54593972-54611732 Medicago truncatula
Medtr4g130940 10.0kb upstream 10.0kb upstream 10000 false chr4: 54601733-54611732 Medicago truncatula
Medtr4g130940 10.0kb downstream 10.0kb downstream 17761 true chr4: 54583972-54601732 Medicago truncatula
Medtr4g130940 10.0kb downstream 10.0kb downstream 10000 false chr4: 54583972-54593971 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305663 5265 Fabidae View MSA
124071240 5270 Rosid View MSA
123736508 5271 Pentapetalae View MSA
122791057 5272 Eudicot View MSA
122046114 5273 Angiosperm View MSA
121344241 5274 Embryophyte View MSA
123424172 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.6     High High
cufflinks 9.201        
cufflinks 14.217     High  
cufflinks 2.693       Low
cufflinks 9.645        
cufflinks 4.551       Low
cufflinks 10.819     High  
cufflinks 11.825     High  
cufflinks 7.599        

0 Strain