Gene : Medtr4g125700 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG2616 - Pyridoxalphosphate-dependent enzyme/predicted threonine synthase Description:  threonine synthase-like protein
Genomic Order:  6686 Name:  ? Medtr4g125700
Secondary Identifier:  ? PAC:31106566
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4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula HOMOSER-THRESYN-PWY Medicago truncatula pathologic  
Mtruncatula PWY-3001 Medicago truncatula pathologic  
Mtruncatula PWY-724 Medicago truncatula pathologic  
Mtruncatula THRESYN-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g125700 0.5kb upstream 0.5kb upstream 2591 true chr4: 52164381-52166971 Medicago truncatula
Medtr4g125700 0.5kb upstream 0.5kb upstream 500 false chr4: 52164381-52164880 Medicago truncatula
Medtr4g125700 0.5kb downstream 0.5kb downstream 2591 true chr4: 52164881-52167471 Medicago truncatula
Medtr4g125700 0.5kb downstream 0.5kb downstream 500 false chr4: 52166972-52167471 Medicago truncatula
Medtr4g125700 1.0kb upstream 1.0kb upstream 3091 true chr4: 52163881-52166971 Medicago truncatula
Medtr4g125700 1.0kb upstream 1.0kb upstream 1000 false chr4: 52163881-52164880 Medicago truncatula
Medtr4g125700 1.0kb downstream 1.0kb downstream 3091 true chr4: 52164881-52167971 Medicago truncatula
Medtr4g125700 1.0kb downstream 1.0kb downstream 1000 false chr4: 52166972-52167971 Medicago truncatula
Medtr4g125700 2.0kb upstream 2.0kb upstream 4091 true chr4: 52162881-52166971 Medicago truncatula
Medtr4g125700 2.0kb upstream 2.0kb upstream 2000 false chr4: 52162881-52164880 Medicago truncatula
Medtr4g125700 2.0kb downstream 2.0kb downstream 4091 true chr4: 52164881-52168971 Medicago truncatula
Medtr4g125700 2.0kb downstream 2.0kb downstream 2000 false chr4: 52166972-52168971 Medicago truncatula
Medtr4g125700 5.0kb upstream 5.0kb upstream 7091 true chr4: 52159881-52166971 Medicago truncatula
Medtr4g125700 5.0kb upstream 5.0kb upstream 5000 false chr4: 52159881-52164880 Medicago truncatula
Medtr4g125700 5.0kb downstream 5.0kb downstream 7091 true chr4: 52164881-52171971 Medicago truncatula
Medtr4g125700 5.0kb downstream 5.0kb downstream 5000 false chr4: 52166972-52171971 Medicago truncatula
Medtr4g125700 10.0kb upstream 10.0kb upstream 12091 true chr4: 52154881-52166971 Medicago truncatula
Medtr4g125700 10.0kb upstream 10.0kb upstream 10000 false chr4: 52154881-52164880 Medicago truncatula
Medtr4g125700 10.0kb downstream 10.0kb downstream 12091 true chr4: 52164881-52176971 Medicago truncatula
Medtr4g125700 10.0kb downstream 10.0kb downstream 10000 false chr4: 52166972-52176971 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041159 5273 Angiosperm View MSA
122312223 5265 Fabidae View MSA
124069376 5270 Rosid View MSA
123748441 5271 Pentapetalae View MSA
122786729 5272 Eudicot View MSA
121349368 5274 Embryophyte View MSA
123424940 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.552     High  
cufflinks 4.727        
cufflinks 6.578        
cufflinks 7.557        
cufflinks 6.085        
cufflinks 9.495        
cufflinks 17.996     High  
cufflinks 4.936        
cufflinks 57.349     High High

0 Strain