Gene : Medtr4g132500 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11946:SF7 - LEUCINE--TRNA LIGASE, MITOCHONDRIAL-RELATED Description:  leucyl-tRNA synthetase
Genomic Order:  7136 Name:  ? Medtr4g132500
Secondary Identifier:  ? PAC:31106866
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g132500 0.5kb upstream 0.5kb upstream 11356 true chr4: 55386514-55397869 Medicago truncatula
Medtr4g132500 0.5kb upstream 0.5kb upstream 500 false chr4: 55397370-55397869 Medicago truncatula
Medtr4g132500 0.5kb downstream 0.5kb downstream 11356 true chr4: 55386014-55397369 Medicago truncatula
Medtr4g132500 0.5kb downstream 0.5kb downstream 500 false chr4: 55386014-55386513 Medicago truncatula
Medtr4g132500 1.0kb upstream 1.0kb upstream 11856 true chr4: 55386514-55398369 Medicago truncatula
Medtr4g132500 1.0kb upstream 1.0kb upstream 1000 false chr4: 55397370-55398369 Medicago truncatula
Medtr4g132500 1.0kb downstream 1.0kb downstream 11856 true chr4: 55385514-55397369 Medicago truncatula
Medtr4g132500 1.0kb downstream 1.0kb downstream 1000 false chr4: 55385514-55386513 Medicago truncatula
Medtr4g132500 2.0kb upstream 2.0kb upstream 12856 true chr4: 55386514-55399369 Medicago truncatula
Medtr4g132500 2.0kb upstream 2.0kb upstream 2000 false chr4: 55397370-55399369 Medicago truncatula
Medtr4g132500 2.0kb downstream 2.0kb downstream 12856 true chr4: 55384514-55397369 Medicago truncatula
Medtr4g132500 2.0kb downstream 2.0kb downstream 2000 false chr4: 55384514-55386513 Medicago truncatula
Medtr4g132500 5.0kb upstream 5.0kb upstream 15856 true chr4: 55386514-55402369 Medicago truncatula
Medtr4g132500 5.0kb upstream 5.0kb upstream 5000 false chr4: 55397370-55402369 Medicago truncatula
Medtr4g132500 5.0kb downstream 5.0kb downstream 15856 true chr4: 55381514-55397369 Medicago truncatula
Medtr4g132500 5.0kb downstream 5.0kb downstream 5000 false chr4: 55381514-55386513 Medicago truncatula
Medtr4g132500 10.0kb upstream 10.0kb upstream 20856 true chr4: 55386514-55407369 Medicago truncatula
Medtr4g132500 10.0kb upstream 10.0kb upstream 10000 false chr4: 55397370-55407369 Medicago truncatula
Medtr4g132500 10.0kb downstream 10.0kb downstream 20856 true chr4: 55376514-55397369 Medicago truncatula
Medtr4g132500 10.0kb downstream 10.0kb downstream 10000 false chr4: 55376514-55386513 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041369 5273 Angiosperm View MSA
122306893 5265 Fabidae View MSA
124073421 5270 Rosid View MSA
123749958 5271 Pentapetalae View MSA
122789048 5272 Eudicot View MSA
121347479 5274 Embryophyte View MSA
123424257 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.496        
cufflinks 4.566        
cufflinks 4.486        
cufflinks 0.07       Low
cufflinks 5.421       High
cufflinks 0.049     Low Low
cufflinks 0.147        
cufflinks 5.402       High
cufflinks 0.105        

0 Strain