Gene : Medtr4g127140 M. truncatula Mt4.0v1
Defline:  (1 of 6) PTHR11945//PTHR11945:SF164 - MADS BOX PROTEIN Description:  MADS-box transcription factor family protein
Genomic Order:  6761 Name:  ? Medtr4g127140
Secondary Identifier:  ? PAC:31114252
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g127140 0.5kb upstream 0.5kb upstream 1312 true chr4: 52740241-52741552 Medicago truncatula
Medtr4g127140 0.5kb upstream 0.5kb upstream 500 false chr4: 52741053-52741552 Medicago truncatula
Medtr4g127140 0.5kb downstream 0.5kb downstream 1312 true chr4: 52739741-52741052 Medicago truncatula
Medtr4g127140 0.5kb downstream 0.5kb downstream 500 false chr4: 52739741-52740240 Medicago truncatula
Medtr4g127140 1.0kb upstream 1.0kb upstream 1812 true chr4: 52740241-52742052 Medicago truncatula
Medtr4g127140 1.0kb upstream 1.0kb upstream 1000 false chr4: 52741053-52742052 Medicago truncatula
Medtr4g127140 1.0kb downstream 1.0kb downstream 1812 true chr4: 52739241-52741052 Medicago truncatula
Medtr4g127140 1.0kb downstream 1.0kb downstream 1000 false chr4: 52739241-52740240 Medicago truncatula
Medtr4g127140 2.0kb upstream 2.0kb upstream 2812 true chr4: 52740241-52743052 Medicago truncatula
Medtr4g127140 2.0kb upstream 2.0kb upstream 2000 false chr4: 52741053-52743052 Medicago truncatula
Medtr4g127140 2.0kb downstream 2.0kb downstream 2812 true chr4: 52738241-52741052 Medicago truncatula
Medtr4g127140 2.0kb downstream 2.0kb downstream 2000 false chr4: 52738241-52740240 Medicago truncatula
Medtr4g127140 5.0kb upstream 5.0kb upstream 5812 true chr4: 52740241-52746052 Medicago truncatula
Medtr4g127140 5.0kb upstream 5.0kb upstream 5000 false chr4: 52741053-52746052 Medicago truncatula
Medtr4g127140 5.0kb downstream 5.0kb downstream 5812 true chr4: 52735241-52741052 Medicago truncatula
Medtr4g127140 5.0kb downstream 5.0kb downstream 5000 false chr4: 52735241-52740240 Medicago truncatula
Medtr4g127140 10.0kb upstream 10.0kb upstream 10812 true chr4: 52740241-52751052 Medicago truncatula
Medtr4g127140 10.0kb upstream 10.0kb upstream 10000 false chr4: 52741053-52751052 Medicago truncatula
Medtr4g127140 10.0kb downstream 10.0kb downstream 10812 true chr4: 52730241-52741052 Medicago truncatula
Medtr4g127140 10.0kb downstream 10.0kb downstream 10000 false chr4: 52730241-52740240 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311915 5265 Fabidae View MSA
124073225 5270 Rosid View MSA
123753664 5271 Pentapetalae View MSA
122797561 5272 Eudicot View MSA
122050867 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.934        
cufflinks 0.699       Low
cufflinks 1.832        
cufflinks 1.807        
cufflinks 1.379        
cufflinks 5.838       High
cufflinks 3.101        
cufflinks 0.847       Low
cufflinks 6.221       High

0 Strain