Gene : Medtr4g128220 M. truncatula Mt4.0v1
Defline:  (1 of 5) PF09177 - Syntaxin 6, N-terminal (Syntaxin-6_N) Description:  syntaxin/T-SNARE family protein
Genomic Order:  6842 Name:  ? Medtr4g128220
Secondary Identifier:  ? PAC:31107685
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g128220 0.5kb upstream 0.5kb upstream 4375 true chr4: 53364832-53369206 Medicago truncatula
Medtr4g128220 0.5kb upstream 0.5kb upstream 500 false chr4: 53368707-53369206 Medicago truncatula
Medtr4g128220 0.5kb downstream 0.5kb downstream 4375 true chr4: 53364332-53368706 Medicago truncatula
Medtr4g128220 0.5kb downstream 0.5kb downstream 500 false chr4: 53364332-53364831 Medicago truncatula
Medtr4g128220 1.0kb upstream 1.0kb upstream 4875 true chr4: 53364832-53369706 Medicago truncatula
Medtr4g128220 1.0kb upstream 1.0kb upstream 1000 false chr4: 53368707-53369706 Medicago truncatula
Medtr4g128220 1.0kb downstream 1.0kb downstream 4875 true chr4: 53363832-53368706 Medicago truncatula
Medtr4g128220 1.0kb downstream 1.0kb downstream 1000 false chr4: 53363832-53364831 Medicago truncatula
Medtr4g128220 2.0kb upstream 2.0kb upstream 5875 true chr4: 53364832-53370706 Medicago truncatula
Medtr4g128220 2.0kb upstream 2.0kb upstream 2000 false chr4: 53368707-53370706 Medicago truncatula
Medtr4g128220 2.0kb downstream 2.0kb downstream 5875 true chr4: 53362832-53368706 Medicago truncatula
Medtr4g128220 2.0kb downstream 2.0kb downstream 2000 false chr4: 53362832-53364831 Medicago truncatula
Medtr4g128220 5.0kb upstream 5.0kb upstream 8875 true chr4: 53364832-53373706 Medicago truncatula
Medtr4g128220 5.0kb upstream 5.0kb upstream 5000 false chr4: 53368707-53373706 Medicago truncatula
Medtr4g128220 5.0kb downstream 5.0kb downstream 8875 true chr4: 53359832-53368706 Medicago truncatula
Medtr4g128220 5.0kb downstream 5.0kb downstream 5000 false chr4: 53359832-53364831 Medicago truncatula
Medtr4g128220 10.0kb upstream 10.0kb upstream 13875 true chr4: 53364832-53378706 Medicago truncatula
Medtr4g128220 10.0kb upstream 10.0kb upstream 10000 false chr4: 53368707-53378706 Medicago truncatula
Medtr4g128220 10.0kb downstream 10.0kb downstream 13875 true chr4: 53354832-53368706 Medicago truncatula
Medtr4g128220 10.0kb downstream 10.0kb downstream 10000 false chr4: 53354832-53364831 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305372 5265 Fabidae View MSA
124050806 5270 Rosid View MSA
123751797 5271 Pentapetalae View MSA
122791749 5272 Eudicot View MSA
122042907 5273 Angiosperm View MSA
121348883 5274 Embryophyte View MSA
123381058 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.821       Low
cufflinks 7.515        
cufflinks 10.617     High High
cufflinks 2.816        
cufflinks 5.268        
cufflinks 1.963       Low
cufflinks 4.897        
cufflinks 9.04     High High
cufflinks 3.014        

0 Strain