Gene : Medtr4g119840 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR11777:SF7 - THREONYL AND ALANYL TRNA SYNTHETASE SECOND ADDITIONAL DOMAIN-CONTAINING PROTEIN Description:  alanyl-tRNA synthetase
Genomic Order:  6341 Name:  ? Medtr4g119840
Secondary Identifier:  ? PAC:31112191
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula TRNA-CHARGING-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g119840 0.5kb upstream 0.5kb upstream 4633 true chr4: 49661462-49666094 Medicago truncatula
Medtr4g119840 0.5kb upstream 0.5kb upstream 500 false chr4: 49665595-49666094 Medicago truncatula
Medtr4g119840 0.5kb downstream 0.5kb downstream 4633 true chr4: 49660962-49665594 Medicago truncatula
Medtr4g119840 0.5kb downstream 0.5kb downstream 500 false chr4: 49660962-49661461 Medicago truncatula
Medtr4g119840 1.0kb upstream 1.0kb upstream 5133 true chr4: 49661462-49666594 Medicago truncatula
Medtr4g119840 1.0kb upstream 1.0kb upstream 1000 false chr4: 49665595-49666594 Medicago truncatula
Medtr4g119840 1.0kb downstream 1.0kb downstream 5133 true chr4: 49660462-49665594 Medicago truncatula
Medtr4g119840 1.0kb downstream 1.0kb downstream 1000 false chr4: 49660462-49661461 Medicago truncatula
Medtr4g119840 2.0kb upstream 2.0kb upstream 6133 true chr4: 49661462-49667594 Medicago truncatula
Medtr4g119840 2.0kb upstream 2.0kb upstream 2000 false chr4: 49665595-49667594 Medicago truncatula
Medtr4g119840 2.0kb downstream 2.0kb downstream 6133 true chr4: 49659462-49665594 Medicago truncatula
Medtr4g119840 2.0kb downstream 2.0kb downstream 2000 false chr4: 49659462-49661461 Medicago truncatula
Medtr4g119840 5.0kb upstream 5.0kb upstream 9133 true chr4: 49661462-49670594 Medicago truncatula
Medtr4g119840 5.0kb upstream 5.0kb upstream 5000 false chr4: 49665595-49670594 Medicago truncatula
Medtr4g119840 5.0kb downstream 5.0kb downstream 9133 true chr4: 49656462-49665594 Medicago truncatula
Medtr4g119840 5.0kb downstream 5.0kb downstream 5000 false chr4: 49656462-49661461 Medicago truncatula
Medtr4g119840 10.0kb upstream 10.0kb upstream 14133 true chr4: 49661462-49675594 Medicago truncatula
Medtr4g119840 10.0kb upstream 10.0kb upstream 10000 false chr4: 49665595-49675594 Medicago truncatula
Medtr4g119840 10.0kb downstream 10.0kb downstream 14133 true chr4: 49651462-49665594 Medicago truncatula
Medtr4g119840 10.0kb downstream 10.0kb downstream 10000 false chr4: 49651462-49661461 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041267 5273 Angiosperm View MSA
122303941 5265 Fabidae View MSA
124061636 5270 Rosid View MSA
123736898 5271 Pentapetalae View MSA
122790717 5272 Eudicot View MSA
121346902 5274 Embryophyte View MSA
123425374 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.879       High
cufflinks 5.327        
cufflinks 4.055        
cufflinks 2.001       Low
cufflinks 5.934        
cufflinks 1.954       Low
cufflinks 4.157        
cufflinks 4.489        
cufflinks 3.933        

0 Strain