Gene : Medtr4g122060 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11246//PTHR11246:SF11 - PRE-MRNA SPLICING FACTOR Description:  PsbB mRNA maturation factor Mbb1
Genomic Order:  6441 Name:  ? Medtr4g122060
Secondary Identifier:  ? PAC:31114505
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr4g122060 0.5kb upstream 0.5kb upstream 6693 true chr4: 50394986-50401678 Medicago truncatula
Medtr4g122060 0.5kb upstream 0.5kb upstream 500 false chr4: 50401179-50401678 Medicago truncatula
Medtr4g122060 0.5kb downstream 0.5kb downstream 6693 true chr4: 50394486-50401178 Medicago truncatula
Medtr4g122060 0.5kb downstream 0.5kb downstream 500 false chr4: 50394486-50394985 Medicago truncatula
Medtr4g122060 1.0kb upstream 1.0kb upstream 7193 true chr4: 50394986-50402178 Medicago truncatula
Medtr4g122060 1.0kb upstream 1.0kb upstream 1000 false chr4: 50401179-50402178 Medicago truncatula
Medtr4g122060 1.0kb downstream 1.0kb downstream 7193 true chr4: 50393986-50401178 Medicago truncatula
Medtr4g122060 1.0kb downstream 1.0kb downstream 1000 false chr4: 50393986-50394985 Medicago truncatula
Medtr4g122060 2.0kb upstream 2.0kb upstream 8193 true chr4: 50394986-50403178 Medicago truncatula
Medtr4g122060 2.0kb upstream 2.0kb upstream 2000 false chr4: 50401179-50403178 Medicago truncatula
Medtr4g122060 2.0kb downstream 2.0kb downstream 8193 true chr4: 50392986-50401178 Medicago truncatula
Medtr4g122060 2.0kb downstream 2.0kb downstream 2000 false chr4: 50392986-50394985 Medicago truncatula
Medtr4g122060 5.0kb upstream 5.0kb upstream 11193 true chr4: 50394986-50406178 Medicago truncatula
Medtr4g122060 5.0kb upstream 5.0kb upstream 5000 false chr4: 50401179-50406178 Medicago truncatula
Medtr4g122060 5.0kb downstream 5.0kb downstream 11193 true chr4: 50389986-50401178 Medicago truncatula
Medtr4g122060 5.0kb downstream 5.0kb downstream 5000 false chr4: 50389986-50394985 Medicago truncatula
Medtr4g122060 10.0kb upstream 10.0kb upstream 16193 true chr4: 50394986-50411178 Medicago truncatula
Medtr4g122060 10.0kb upstream 10.0kb upstream 10000 false chr4: 50401179-50411178 Medicago truncatula
Medtr4g122060 10.0kb downstream 10.0kb downstream 16193 true chr4: 50384986-50401178 Medicago truncatula
Medtr4g122060 10.0kb downstream 10.0kb downstream 10000 false chr4: 50384986-50394985 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300236 5265 Fabidae View MSA
124068395 5270 Rosid View MSA
123738707 5271 Pentapetalae View MSA
122785733 5272 Eudicot View MSA
122045803 5273 Angiosperm View MSA
121347317 5274 Embryophyte View MSA
123426639 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.18        
cufflinks 7.603        
cufflinks 10.436     High  
cufflinks 0.065     Low  
cufflinks 9.255        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.047     Low Low
cufflinks 12.147     High High
cufflinks 0.039     Low Low

0 Strain