Gene : Medtr5g023020 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 Description:  DNA-directed RNA polymerase
Genomic Order:  1315 Name:  ? Medtr5g023020
Secondary Identifier:  ? PAC:31085316
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g023020 0.5kb upstream 0.5kb upstream 9761 true chr5: 9129653-9139413 Medicago truncatula
Medtr5g023020 0.5kb upstream 0.5kb upstream 500 false chr5: 9129653-9130152 Medicago truncatula
Medtr5g023020 0.5kb downstream 0.5kb downstream 9761 true chr5: 9130153-9139913 Medicago truncatula
Medtr5g023020 0.5kb downstream 0.5kb downstream 500 false chr5: 9139414-9139913 Medicago truncatula
Medtr5g023020 1.0kb upstream 1.0kb upstream 10261 true chr5: 9129153-9139413 Medicago truncatula
Medtr5g023020 1.0kb upstream 1.0kb upstream 1000 false chr5: 9129153-9130152 Medicago truncatula
Medtr5g023020 1.0kb downstream 1.0kb downstream 10261 true chr5: 9130153-9140413 Medicago truncatula
Medtr5g023020 1.0kb downstream 1.0kb downstream 1000 false chr5: 9139414-9140413 Medicago truncatula
Medtr5g023020 2.0kb upstream 2.0kb upstream 11261 true chr5: 9128153-9139413 Medicago truncatula
Medtr5g023020 2.0kb upstream 2.0kb upstream 2000 false chr5: 9128153-9130152 Medicago truncatula
Medtr5g023020 2.0kb downstream 2.0kb downstream 11261 true chr5: 9130153-9141413 Medicago truncatula
Medtr5g023020 2.0kb downstream 2.0kb downstream 2000 false chr5: 9139414-9141413 Medicago truncatula
Medtr5g023020 5.0kb upstream 5.0kb upstream 14261 true chr5: 9125153-9139413 Medicago truncatula
Medtr5g023020 5.0kb upstream 5.0kb upstream 5000 false chr5: 9125153-9130152 Medicago truncatula
Medtr5g023020 5.0kb downstream 5.0kb downstream 14261 true chr5: 9130153-9144413 Medicago truncatula
Medtr5g023020 5.0kb downstream 5.0kb downstream 5000 false chr5: 9139414-9144413 Medicago truncatula
Medtr5g023020 10.0kb upstream 10.0kb upstream 19261 true chr5: 9120153-9139413 Medicago truncatula
Medtr5g023020 10.0kb upstream 10.0kb upstream 10000 false chr5: 9120153-9130152 Medicago truncatula
Medtr5g023020 10.0kb downstream 10.0kb downstream 19261 true chr5: 9130153-9149413 Medicago truncatula
Medtr5g023020 10.0kb downstream 10.0kb downstream 10000 false chr5: 9139414-9149413 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041040 5273 Angiosperm View MSA
122307609 5265 Fabidae View MSA
124064405 5270 Rosid View MSA
123740882 5271 Pentapetalae View MSA
122790504 5272 Eudicot View MSA
121343935 5274 Embryophyte View MSA
123424077 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.127     High  
cufflinks 17.431     High  
cufflinks 18.367     High  
cufflinks 7.218       Low
cufflinks 18.106     High  
cufflinks 4.609       Low
cufflinks 10.537     High  
cufflinks 16.025     High  
cufflinks 13.787     High  

0 Strain