Protein Family : RNA polymerase II large subunit 122041040

Method ID:  5273 Method Name:  Angiosperm
Sequence Alignment:  View MSA Member Count:  68
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68 Genes

Primary Identifier Defline Organism Name Symbol Length Chromosome Location
29784.t000012 (1 of 1) K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) R. communis v0.1 8136   29784: 83022-91157
Cucsa.322880 (1 of 1) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 C. sativus v1.0 9368   scaffold03080: 2478520-2487887
orange1.1g000235m.g (1 of 2) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 C. sinensis v1.1 9058   scaffold00017: 1231299-1240356
AT4G35800 (1 of 1) K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) A. thaliana TAIR10 NRPB1 7472   Chr4: 16960657-16968128
Thhalv10024193m.g (1 of 1) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 E. salsugineum v1.0 7616   scaffold_1: 1791470-1799085
Ciclev10024686m.g (1 of 1) PF04990 - RNA polymerase Rpb1, domain 7 (RNA_pol_Rpb1_7) C. clementina v1.0 9292   scaffold_7: 517023-526314
Lus10041856.g (1 of 2) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 L. usitatissimum v1.0 8206   scaffold272: 2059166-2067371
Gorai.007G190500 (1 of 2) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 G. raimondii v2.1 8626   Chr07: 18631356-18639981
Thecc1EG000127 (1 of 1) K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) T. cacao v1.1 10056   scaffold_1: 506233-516288
Migut.N01734 (1 of 1) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 M. guttatus v2.0 8530   scaffold_14: 14876437-14884966
Araha.12053s0007 (1 of 1) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 A. halleri v1.1 7588   Scaffold12053: 31880-39467
Cagra.2236s0033 (1 of 1) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 C. grandiflora v1.1 7474   Scaffold2236: 119713-127186
Glyma.11G081200 (1 of 4) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 G. max Wm82.a2.v1 8599   Chr11: 6094537-6103135
Glyma.01G162200 (1 of 4) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 G. max Wm82.a2.v1 8640   Chr01: 50028410-50037049
Brara.H01626 (1 of 2) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 B. rapa FPsc v1.3 7491   A08: 16169639-16177129
Bostr.7867s1445 (1 of 1) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 B. stricta v1.2 7614   Scaffold7867: 7254686-7262299
Medtr5g023020 (1 of 1) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 M. truncatula Mt4.0v1 9261   chr5: 9130153-9139413
SapurV1A.0769s0090 (1 of 1) K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) S. purpurea v1.0 9215   chr05: 7188866-7198080
evm_27.TU.AmTr_v1.0_scaffold00001.137 (1 of 1) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 A. trichopoda v1.0 8660   AmTr_v1.0_scaffold00001: 2288133-2296792
Traes_7AL_EE3CD1CF3 (1 of 3) PF00623//PF04983//PF04990//PF04992//PF04997//PF04998//PF05000//PF05001 - RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2) // RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 7 (RNA_pol_Rpb1_7) // RNA polymerase Rpb1, domain 6 (RNA_pol_Rpb1_6) // RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) // RNA polymerase Rpb1 C-terminal repeat (RNA_pol_Rpb1_R) T. aestivum v2.2 8093   ta_iwgsc_7al_v1_4366600: 1803-9895
Traes_7BL_F8D5E60B1 (1 of 3) PF00623//PF04983//PF04990//PF04992//PF04997//PF04998//PF05000//PF05001 - RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2) // RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 7 (RNA_pol_Rpb1_7) // RNA polymerase Rpb1, domain 6 (RNA_pol_Rpb1_6) // RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) // RNA polymerase Rpb1 C-terminal repeat (RNA_pol_Rpb1_R) T. aestivum v2.2 8060   ta_iwgsc_7bl_v1_6751109: 1-8060
Traes_7DL_18F2A8567 (1 of 3) PF00623//PF04983//PF04990//PF04992//PF04997//PF04998//PF05000//PF05001 - RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2) // RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 7 (RNA_pol_Rpb1_7) // RNA polymerase Rpb1, domain 6 (RNA_pol_Rpb1_6) // RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) // RNA polymerase Rpb1 C-terminal repeat (RNA_pol_Rpb1_R) T. aestivum v2.2 8695   ta_iwgsc_7dl_v1_3388050: 7619-16313
Eucgr.I02304 (1 of 2) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 E. grandis v2.0 8982   Chr09: 33395585-33404566
Prupe.7G175200 (1 of 1) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 P. persica v2.1 9111   Pp07: 17458547-17467657
GSMUA_Achr3G00590_001 (1 of 1) PF00623//PF04983//PF04992//PF04997//PF04998//PF05000 - RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2) // RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 6 (RNA_pol_Rpb1_6) // RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) M. acuminata v1 8426   chr3: 462581-471006
Manes.01G151000 (1 of 1) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 M. esculenta v6.1 8562   Chromosome01: 26090718-26099279
Kalax.0150s0077 (1 of 2) PF00623//PF04983//PF04990//PF04992//PF04997//PF04998//PF05000//PF05001 - RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2) // RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 7 (RNA_pol_Rpb1_7) // RNA polymerase Rpb1, domain 6 (RNA_pol_Rpb1_6) // RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) // RNA polymerase Rpb1 C-terminal repeat (RNA_pol_Rpb1_R) K. laxiflora v1.1 8471   scaffold_150: 589053-597523
Kalax.0039s0011 (1 of 2) PF00623//PF04983//PF04990//PF04992//PF04997//PF04998//PF05000//PF05001 - RNA polymerase Rpb1, domain 2 (RNA_pol_Rpb1_2) // RNA polymerase Rpb1, domain 3 (RNA_pol_Rpb1_3) // RNA polymerase Rpb1, domain 7 (RNA_pol_Rpb1_7) // RNA polymerase Rpb1, domain 6 (RNA_pol_Rpb1_6) // RNA polymerase Rpb1, domain 1 (RNA_pol_Rpb1_1) // RNA polymerase Rpb1, domain 5 (RNA_pol_Rpb1_5) // RNA polymerase Rpb1, domain 4 (RNA_pol_Rpb1_4) // RNA polymerase Rpb1 C-terminal repeat (RNA_pol_Rpb1_R) K. laxiflora v1.1 8407   scaffold_39: 90937-99343
Seita.6G058200 (1 of 2) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 S. italica v2.2 16494   scaffold_6: 4688942-4705435
Bradi3g16660 (1 of 2) K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) B. distachyon v3.1 9212   Bd3: 14850296-14859507

68 Members

Protein Name Organism Name Cluster ID Cluster Name Same Organism Count Method ID Method Name
Migut.N01734.1.p M. guttatus v2.0 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
AL7G15270.t1 A. lyrata v2.1 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
Tp57577_TGAC_v2_mRNA25996 T. pratense v2 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
DCAR_016740 D. carota v2.0 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
Solyc02g083350.2.1 S. lycopersicum ITAG2.4 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
Araha.12053s0007.1.p A. halleri v1.1 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
AUR62026407-RA C. quinoa v1.0 122041040 RNA polymerase II large subunit 2 5273 Angiosperm
AUR62026224-RA C. quinoa v1.0 122041040 RNA polymerase II large subunit 2 5273 Angiosperm
Cagra.2236s0033.1.p C. grandiflora v1.1 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
Glyma.11G081200.1.p G. max Wm82.a2.v1 122041040 RNA polymerase II large subunit 2 5273 Angiosperm
Glyma.01G162200.1.p G. max Wm82.a2.v1 122041040 RNA polymerase II large subunit 2 5273 Angiosperm
Brara.H01626.1.p B. rapa FPsc v1.3 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
Bostr.7867s1445.1.p B. stricta v1.2 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
orange1.1g000235m C. sinensis v1.1 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
Medtr5g023020.1 M. truncatula Mt4.0v1 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
SapurV1A.0769s0090.1.p S. purpurea v1.0 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
evm_27.model.AmTr_v1.0_scaffold00001.137 A. trichopoda v1.0 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
AT4G35800.1 A. thaliana TAIR10 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
Traes_7AL_EE3CD1CF3.2 T. aestivum v2.2 122041040 RNA polymerase II large subunit 3 5273 Angiosperm
Traes_7DL_18F2A8567.2 T. aestivum v2.2 122041040 RNA polymerase II large subunit 3 5273 Angiosperm
Traes_7BL_F8D5E60B1.1 T. aestivum v2.2 122041040 RNA polymerase II large subunit 3 5273 Angiosperm
Eucgr.I02304.1.p E. grandis v2.0 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
Prupe.7G175200.1.p P. persica v2.1 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
Thhalv10024193m E. salsugineum v1.0 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
GSMUA_Achr3P00590_001 M. acuminata v1 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
Manes.01G151000.1.p M. esculenta v6.1 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
Kalax.0039s0011.1.p K. laxiflora v1.1 122041040 RNA polymerase II large subunit 2 5273 Angiosperm
Kalax.0150s0077.1.p K. laxiflora v1.1 122041040 RNA polymerase II large subunit 2 5273 Angiosperm
Ciclev10024686m C. clementina v1.0 122041040 RNA polymerase II large subunit 1 5273 Angiosperm
Seita.6G058200.1.p S. italica v2.2 122041040 RNA polymerase II large subunit 1 5273 Angiosperm