Gene : Glyma.01G162200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 Genomic Order:  1622
Name:  ? Glyma.01G162200 Secondary Identifier:  ? PAC:30541520
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.01G162200 0.5kb upstream 0.5kb upstream 9140 true Chr01: 50028410-50037549 Glycine max
Glyma.01G162200 0.5kb upstream 0.5kb upstream 500 false Chr01: 50037050-50037549 Glycine max
Glyma.01G162200 0.5kb downstream 0.5kb downstream 9140 true Chr01: 50027910-50037049 Glycine max
Glyma.01G162200 0.5kb downstream 0.5kb downstream 500 false Chr01: 50027910-50028409 Glycine max
Glyma.01G162200 1.0kb upstream 1.0kb upstream 9640 true Chr01: 50028410-50038049 Glycine max
Glyma.01G162200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 50037050-50038049 Glycine max
Glyma.01G162200 1.0kb downstream 1.0kb downstream 9640 true Chr01: 50027410-50037049 Glycine max
Glyma.01G162200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 50027410-50028409 Glycine max
Glyma.01G162200 2.0kb upstream 2.0kb upstream 10640 true Chr01: 50028410-50039049 Glycine max
Glyma.01G162200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 50037050-50039049 Glycine max
Glyma.01G162200 2.0kb downstream 2.0kb downstream 10640 true Chr01: 50026410-50037049 Glycine max
Glyma.01G162200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 50026410-50028409 Glycine max
Glyma.01G162200 5.0kb upstream 5.0kb upstream 13640 true Chr01: 50028410-50042049 Glycine max
Glyma.01G162200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 50037050-50042049 Glycine max
Glyma.01G162200 5.0kb downstream 5.0kb downstream 13640 true Chr01: 50023410-50037049 Glycine max
Glyma.01G162200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 50023410-50028409 Glycine max
Glyma.01G162200 10.0kb upstream 10.0kb upstream 18640 true Chr01: 50028410-50047049 Glycine max
Glyma.01G162200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 50037050-50047049 Glycine max
Glyma.01G162200 10.0kb downstream 10.0kb downstream 18640 true Chr01: 50018410-50037049 Glycine max
Glyma.01G162200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 50018410-50028409 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041040 5273 Angiosperm View MSA
122307609 5265 Fabidae View MSA
124064405 5270 Rosid View MSA
123740882 5271 Pentapetalae View MSA
122790504 5272 Eudicot View MSA
121343935 5274 Embryophyte View MSA
123424077 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.4305 0.0 53.1629   High
cufflinks 10.4209 0.0 32.9472    
cufflinks 17.1716 0.0 61.4887   High
cufflinks 11.5006 0.0 37.1875    
cufflinks 9.87515 0.0 31.8737    
cufflinks 5.07475 0.0 17.31   Low
cufflinks 13.2938 0.0 44.8043    
cufflinks 7.4951 0.0 22.6797    
cufflinks 10.3809 0.0 34.0311    
cufflinks 3.39       Low
cufflinks 4.246        
cufflinks 6.105        
cufflinks 3.689        
cufflinks 3.559        
cufflinks 2.81       Low
cufflinks 6.697        
cufflinks 3.723        
cufflinks 5.581        
cufflinks 6.961       High
cufflinks 7.864     High High
cufflinks 2.726       Low
cufflinks 7.397     High High
cufflinks 5.388        
cufflinks 4.679        
cufflinks 6.879       High
cufflinks 4.321        

0 Strain