Gene : Seita.6G058200 S. italica v2.2
Defline:  (1 of 2) PTHR19376:SF37 - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 Genomic Order:  581
Name:  ? Seita.6G058200 Secondary Identifier:  ? PAC:32698987
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.6G058200 0.5kb upstream 0.5kb upstream 16994 true scaffold_6: 4688442-4705435 Setaria italica
Seita.6G058200 0.5kb upstream 0.5kb upstream 500 false scaffold_6: 4688442-4688941 Setaria italica
Seita.6G058200 0.5kb downstream 0.5kb downstream 16994 true scaffold_6: 4688942-4705935 Setaria italica
Seita.6G058200 0.5kb downstream 0.5kb downstream 500 false scaffold_6: 4705436-4705935 Setaria italica
Seita.6G058200 1.0kb upstream 1.0kb upstream 17494 true scaffold_6: 4687942-4705435 Setaria italica
Seita.6G058200 1.0kb upstream 1.0kb upstream 1000 false scaffold_6: 4687942-4688941 Setaria italica
Seita.6G058200 1.0kb downstream 1.0kb downstream 17494 true scaffold_6: 4688942-4706435 Setaria italica
Seita.6G058200 1.0kb downstream 1.0kb downstream 1000 false scaffold_6: 4705436-4706435 Setaria italica
Seita.6G058200 2.0kb upstream 2.0kb upstream 18494 true scaffold_6: 4686942-4705435 Setaria italica
Seita.6G058200 2.0kb upstream 2.0kb upstream 2000 false scaffold_6: 4686942-4688941 Setaria italica
Seita.6G058200 2.0kb downstream 2.0kb downstream 18494 true scaffold_6: 4688942-4707435 Setaria italica
Seita.6G058200 2.0kb downstream 2.0kb downstream 2000 false scaffold_6: 4705436-4707435 Setaria italica
Seita.6G058200 5.0kb upstream 5.0kb upstream 21494 true scaffold_6: 4683942-4705435 Setaria italica
Seita.6G058200 5.0kb upstream 5.0kb upstream 5000 false scaffold_6: 4683942-4688941 Setaria italica
Seita.6G058200 5.0kb downstream 5.0kb downstream 21494 true scaffold_6: 4688942-4710435 Setaria italica
Seita.6G058200 5.0kb downstream 5.0kb downstream 5000 false scaffold_6: 4705436-4710435 Setaria italica
Seita.6G058200 10.0kb upstream 10.0kb upstream 26494 true scaffold_6: 4678942-4705435 Setaria italica
Seita.6G058200 10.0kb upstream 10.0kb upstream 10000 false scaffold_6: 4678942-4688941 Setaria italica
Seita.6G058200 10.0kb downstream 10.0kb downstream 26494 true scaffold_6: 4688942-4715435 Setaria italica
Seita.6G058200 10.0kb downstream 10.0kb downstream 10000 false scaffold_6: 4705436-4715435 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041040 5273 Angiosperm View MSA
122179311 5267 Panicoideae View MSA
124580311 5269 Grass View MSA
121343935 5274 Embryophyte View MSA
123424077 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.696     High High
cufflinks 16.372     High  
cufflinks 11.685     High  
cufflinks 10.014        
cufflinks 11.311     High  
cufflinks 15.465     High  
cufflinks 14.748     High  
cufflinks 7.851       Low
cufflinks 10.723        
cufflinks 8.342        
cufflinks 15.232     High  
cufflinks 8.919        
cufflinks 9.542        
cufflinks 6.611       Low
cufflinks 12.082        
cufflinks 20.307     High High
cufflinks 9.4        
cufflinks 23.318     High High
cufflinks 8.259       Low
cufflinks 9.182        

0 Strain