Gene : Bradi3g16660 B. distachyon v3.1
Defline:  (1 of 2) K03006 - DNA-directed RNA polymerase II subunit RPB1 (RPB1, POLR2A) Genomic Order:  2096
Name:  ? Bradi3g16660 Secondary Identifier:  ? PAC:32812744
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Bradi3g16660 0.5kb upstream 0.5kb upstream 9712 true Bd3: 14849796-14859507 Brachypodium distachyon
Bradi3g16660 0.5kb upstream 0.5kb upstream 500 false Bd3: 14849796-14850295 Brachypodium distachyon
Bradi3g16660 0.5kb downstream 0.5kb downstream 9712 true Bd3: 14850296-14860007 Brachypodium distachyon
Bradi3g16660 0.5kb downstream 0.5kb downstream 500 false Bd3: 14859508-14860007 Brachypodium distachyon
Bradi3g16660 1.0kb upstream 1.0kb upstream 10212 true Bd3: 14849296-14859507 Brachypodium distachyon
Bradi3g16660 1.0kb upstream 1.0kb upstream 1000 false Bd3: 14849296-14850295 Brachypodium distachyon
Bradi3g16660 1.0kb downstream 1.0kb downstream 10212 true Bd3: 14850296-14860507 Brachypodium distachyon
Bradi3g16660 1.0kb downstream 1.0kb downstream 1000 false Bd3: 14859508-14860507 Brachypodium distachyon
Bradi3g16660 2.0kb upstream 2.0kb upstream 11212 true Bd3: 14848296-14859507 Brachypodium distachyon
Bradi3g16660 2.0kb upstream 2.0kb upstream 2000 false Bd3: 14848296-14850295 Brachypodium distachyon
Bradi3g16660 2.0kb downstream 2.0kb downstream 11212 true Bd3: 14850296-14861507 Brachypodium distachyon
Bradi3g16660 2.0kb downstream 2.0kb downstream 2000 false Bd3: 14859508-14861507 Brachypodium distachyon
Bradi3g16660 5.0kb upstream 5.0kb upstream 14212 true Bd3: 14845296-14859507 Brachypodium distachyon
Bradi3g16660 5.0kb upstream 5.0kb upstream 5000 false Bd3: 14845296-14850295 Brachypodium distachyon
Bradi3g16660 5.0kb downstream 5.0kb downstream 14212 true Bd3: 14850296-14864507 Brachypodium distachyon
Bradi3g16660 5.0kb downstream 5.0kb downstream 5000 false Bd3: 14859508-14864507 Brachypodium distachyon
Bradi3g16660 10.0kb upstream 10.0kb upstream 19212 true Bd3: 14840296-14859507 Brachypodium distachyon
Bradi3g16660 10.0kb upstream 10.0kb upstream 10000 false Bd3: 14840296-14850295 Brachypodium distachyon
Bradi3g16660 10.0kb downstream 10.0kb downstream 19212 true Bd3: 14850296-14869507 Brachypodium distachyon
Bradi3g16660 10.0kb downstream 10.0kb downstream 10000 false Bd3: 14859508-14869507 Brachypodium distachyon

4 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041040 5273 Angiosperm View MSA
124580311 5269 Grass View MSA
121343935 5274 Embryophyte View MSA
123424077 5275 Viridiplantae View MSA

62 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.885        
cufflinks 20.603     High  
cufflinks 22.855     High  
cufflinks 10.634     High  
cufflinks 8.215        
cufflinks 20.119     High  
cufflinks 18.81     High  
cufflinks 16.356     High  
cufflinks 19.396     High  
cufflinks 8.988        
cufflinks 18.903     High  
cufflinks 22.712     High  
cufflinks 12.08     High  
cufflinks 8.416     High  
cufflinks 6.694       Low
cufflinks 18.552     High  
cufflinks 5.352       Low
cufflinks 27.054     High High
cufflinks 11.611        
cufflinks 7.216        
cufflinks 8.183        
cufflinks 28.315     High High
cufflinks 17.602     High  
cufflinks 13.31     High  
cufflinks 10.906     High  
cufflinks 18.195     High  
cufflinks 11.602     High  
cufflinks 17.794     High  
cufflinks 17.111     High  
cufflinks 21.156     High  

0 Strain