Gene : Medtr5g023060 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG0107//KOG0121 - Alternative splicing factor SRp20/9G8 (RRM superfamily) // Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) Description:  RNA-binding (RRM/RBD/RNP motif) family protein
Genomic Order:  1320 Name:  ? Medtr5g023060
Secondary Identifier:  ? PAC:31085586
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g023060 0.5kb upstream 0.5kb upstream 3568 true chr5: 9164269-9167836 Medicago truncatula
Medtr5g023060 0.5kb upstream 0.5kb upstream 500 false chr5: 9164269-9164768 Medicago truncatula
Medtr5g023060 0.5kb downstream 0.5kb downstream 3568 true chr5: 9164769-9168336 Medicago truncatula
Medtr5g023060 0.5kb downstream 0.5kb downstream 500 false chr5: 9167837-9168336 Medicago truncatula
Medtr5g023060 1.0kb upstream 1.0kb upstream 4068 true chr5: 9163769-9167836 Medicago truncatula
Medtr5g023060 1.0kb upstream 1.0kb upstream 1000 false chr5: 9163769-9164768 Medicago truncatula
Medtr5g023060 1.0kb downstream 1.0kb downstream 4068 true chr5: 9164769-9168836 Medicago truncatula
Medtr5g023060 1.0kb downstream 1.0kb downstream 1000 false chr5: 9167837-9168836 Medicago truncatula
Medtr5g023060 2.0kb upstream 2.0kb upstream 5068 true chr5: 9162769-9167836 Medicago truncatula
Medtr5g023060 2.0kb upstream 2.0kb upstream 2000 false chr5: 9162769-9164768 Medicago truncatula
Medtr5g023060 2.0kb downstream 2.0kb downstream 5068 true chr5: 9164769-9169836 Medicago truncatula
Medtr5g023060 2.0kb downstream 2.0kb downstream 2000 false chr5: 9167837-9169836 Medicago truncatula
Medtr5g023060 5.0kb upstream 5.0kb upstream 8068 true chr5: 9159769-9167836 Medicago truncatula
Medtr5g023060 5.0kb upstream 5.0kb upstream 5000 false chr5: 9159769-9164768 Medicago truncatula
Medtr5g023060 5.0kb downstream 5.0kb downstream 8068 true chr5: 9164769-9172836 Medicago truncatula
Medtr5g023060 5.0kb downstream 5.0kb downstream 5000 false chr5: 9167837-9172836 Medicago truncatula
Medtr5g023060 10.0kb upstream 10.0kb upstream 13068 true chr5: 9154769-9167836 Medicago truncatula
Medtr5g023060 10.0kb upstream 10.0kb upstream 10000 false chr5: 9154769-9164768 Medicago truncatula
Medtr5g023060 10.0kb downstream 10.0kb downstream 13068 true chr5: 9164769-9177836 Medicago truncatula
Medtr5g023060 10.0kb downstream 10.0kb downstream 10000 false chr5: 9167837-9177836 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309837 5265 Fabidae View MSA
124070278 5270 Rosid View MSA
123749009 5271 Pentapetalae View MSA
122794925 5272 Eudicot View MSA
122049449 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121351469 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.503        
cufflinks 3.232       Low
cufflinks 5.383        
cufflinks 17.354     High High
cufflinks 4.6        
cufflinks 32.475     High High
cufflinks 6.315        
cufflinks 3.947        
cufflinks 6.623        

0 Strain