Gene : Medtr5g025480 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG2091 - Predicted member of glycosyl hydrolase family 18 Description:  glycoside hydrolase family 18 protein
Genomic Order:  1503 Name:  ? Medtr5g025480
Secondary Identifier:  ? PAC:31090712
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6902 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g025480 0.5kb upstream 0.5kb upstream 5612 true chr5: 10342936-10348547 Medicago truncatula
Medtr5g025480 0.5kb upstream 0.5kb upstream 500 false chr5: 10342936-10343435 Medicago truncatula
Medtr5g025480 0.5kb downstream 0.5kb downstream 5612 true chr5: 10343436-10349047 Medicago truncatula
Medtr5g025480 0.5kb downstream 0.5kb downstream 500 false chr5: 10348548-10349047 Medicago truncatula
Medtr5g025480 1.0kb upstream 1.0kb upstream 6112 true chr5: 10342436-10348547 Medicago truncatula
Medtr5g025480 1.0kb upstream 1.0kb upstream 1000 false chr5: 10342436-10343435 Medicago truncatula
Medtr5g025480 1.0kb downstream 1.0kb downstream 6112 true chr5: 10343436-10349547 Medicago truncatula
Medtr5g025480 1.0kb downstream 1.0kb downstream 1000 false chr5: 10348548-10349547 Medicago truncatula
Medtr5g025480 2.0kb upstream 2.0kb upstream 7112 true chr5: 10341436-10348547 Medicago truncatula
Medtr5g025480 2.0kb upstream 2.0kb upstream 2000 false chr5: 10341436-10343435 Medicago truncatula
Medtr5g025480 2.0kb downstream 2.0kb downstream 7112 true chr5: 10343436-10350547 Medicago truncatula
Medtr5g025480 2.0kb downstream 2.0kb downstream 2000 false chr5: 10348548-10350547 Medicago truncatula
Medtr5g025480 5.0kb upstream 5.0kb upstream 10112 true chr5: 10338436-10348547 Medicago truncatula
Medtr5g025480 5.0kb upstream 5.0kb upstream 5000 false chr5: 10338436-10343435 Medicago truncatula
Medtr5g025480 5.0kb downstream 5.0kb downstream 10112 true chr5: 10343436-10353547 Medicago truncatula
Medtr5g025480 5.0kb downstream 5.0kb downstream 5000 false chr5: 10348548-10353547 Medicago truncatula
Medtr5g025480 10.0kb upstream 10.0kb upstream 15112 true chr5: 10333436-10348547 Medicago truncatula
Medtr5g025480 10.0kb upstream 10.0kb upstream 10000 false chr5: 10333436-10343435 Medicago truncatula
Medtr5g025480 10.0kb downstream 10.0kb downstream 15112 true chr5: 10343436-10358547 Medicago truncatula
Medtr5g025480 10.0kb downstream 10.0kb downstream 10000 false chr5: 10348548-10358547 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026747 5273 Angiosperm View MSA
122308473 5265 Fabidae View MSA
124069459 5270 Rosid View MSA
123741965 5271 Pentapetalae View MSA
122793996 5272 Eudicot View MSA
121348650 5274 Embryophyte View MSA
123425865 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.73        
cufflinks 0.716        
cufflinks 0.824        
cufflinks 1.32       High
cufflinks 0.835        
cufflinks 0.507       Low
cufflinks 1.07        
cufflinks 0.516       Low
cufflinks 1.653       High

0 Strain