Gene : Medtr5g011400 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG0256 - 1-aminocyclopropane-1-carboxylate synthase, and related proteins Description:  1-aminocyclopropane-1-carboxylate synthase
Genomic Order:  525 Name:  ? Medtr5g011400
Secondary Identifier:  ? PAC:31086253
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula ETHYL-PWY Medicago truncatula pathologic  
Mtruncatula PWY-7270 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g011400 0.5kb upstream 0.5kb upstream 3480 true chr5: 3262017-3265496 Medicago truncatula
Medtr5g011400 0.5kb upstream 0.5kb upstream 500 false chr5: 3262017-3262516 Medicago truncatula
Medtr5g011400 0.5kb downstream 0.5kb downstream 3480 true chr5: 3262517-3265996 Medicago truncatula
Medtr5g011400 0.5kb downstream 0.5kb downstream 500 false chr5: 3265497-3265996 Medicago truncatula
Medtr5g011400 1.0kb upstream 1.0kb upstream 3980 true chr5: 3261517-3265496 Medicago truncatula
Medtr5g011400 1.0kb upstream 1.0kb upstream 1000 false chr5: 3261517-3262516 Medicago truncatula
Medtr5g011400 1.0kb downstream 1.0kb downstream 3980 true chr5: 3262517-3266496 Medicago truncatula
Medtr5g011400 1.0kb downstream 1.0kb downstream 1000 false chr5: 3265497-3266496 Medicago truncatula
Medtr5g011400 2.0kb upstream 2.0kb upstream 4980 true chr5: 3260517-3265496 Medicago truncatula
Medtr5g011400 2.0kb upstream 2.0kb upstream 2000 false chr5: 3260517-3262516 Medicago truncatula
Medtr5g011400 2.0kb downstream 2.0kb downstream 4980 true chr5: 3262517-3267496 Medicago truncatula
Medtr5g011400 2.0kb downstream 2.0kb downstream 2000 false chr5: 3265497-3267496 Medicago truncatula
Medtr5g011400 5.0kb upstream 5.0kb upstream 7980 true chr5: 3257517-3265496 Medicago truncatula
Medtr5g011400 5.0kb upstream 5.0kb upstream 5000 false chr5: 3257517-3262516 Medicago truncatula
Medtr5g011400 5.0kb downstream 5.0kb downstream 7980 true chr5: 3262517-3270496 Medicago truncatula
Medtr5g011400 5.0kb downstream 5.0kb downstream 5000 false chr5: 3265497-3270496 Medicago truncatula
Medtr5g011400 10.0kb upstream 10.0kb upstream 12980 true chr5: 3252517-3265496 Medicago truncatula
Medtr5g011400 10.0kb upstream 10.0kb upstream 10000 false chr5: 3252517-3262516 Medicago truncatula
Medtr5g011400 10.0kb downstream 10.0kb downstream 12980 true chr5: 3262517-3275496 Medicago truncatula
Medtr5g011400 10.0kb downstream 10.0kb downstream 10000 false chr5: 3265497-3275496 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314101 5265 Fabidae View MSA
124060973 5270 Rosid View MSA
123749397 5271 Pentapetalae View MSA
122792167 5272 Eudicot View MSA
122042730 5273 Angiosperm View MSA
121351183 5274 Embryophyte View MSA
123428176 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.043        
cufflinks 10.109     High  
cufflinks 9.322        
cufflinks 1.702        
cufflinks 12.446     High High
cufflinks 0.661       Low
cufflinks 2.162        
cufflinks 13.106     High High
cufflinks 1.447        

0 Strain