Gene : Medtr5g011220 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR31032:SF1 - PGR5-LIKE PROTEIN 1A, CHLOROPLASTIC-RELATED Description:  PGR5-like protein 1A
Genomic Order:  509 Name:  ? Medtr5g011220
Secondary Identifier:  ? PAC:31089485
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g011220 0.5kb upstream 0.5kb upstream 3377 true chr5: 3186523-3189899 Medicago truncatula
Medtr5g011220 0.5kb upstream 0.5kb upstream 500 false chr5: 3189400-3189899 Medicago truncatula
Medtr5g011220 0.5kb downstream 0.5kb downstream 3377 true chr5: 3186023-3189399 Medicago truncatula
Medtr5g011220 0.5kb downstream 0.5kb downstream 500 false chr5: 3186023-3186522 Medicago truncatula
Medtr5g011220 1.0kb upstream 1.0kb upstream 3877 true chr5: 3186523-3190399 Medicago truncatula
Medtr5g011220 1.0kb upstream 1.0kb upstream 1000 false chr5: 3189400-3190399 Medicago truncatula
Medtr5g011220 1.0kb downstream 1.0kb downstream 3877 true chr5: 3185523-3189399 Medicago truncatula
Medtr5g011220 1.0kb downstream 1.0kb downstream 1000 false chr5: 3185523-3186522 Medicago truncatula
Medtr5g011220 2.0kb upstream 2.0kb upstream 4877 true chr5: 3186523-3191399 Medicago truncatula
Medtr5g011220 2.0kb upstream 2.0kb upstream 2000 false chr5: 3189400-3191399 Medicago truncatula
Medtr5g011220 2.0kb downstream 2.0kb downstream 4877 true chr5: 3184523-3189399 Medicago truncatula
Medtr5g011220 2.0kb downstream 2.0kb downstream 2000 false chr5: 3184523-3186522 Medicago truncatula
Medtr5g011220 5.0kb upstream 5.0kb upstream 7877 true chr5: 3186523-3194399 Medicago truncatula
Medtr5g011220 5.0kb upstream 5.0kb upstream 5000 false chr5: 3189400-3194399 Medicago truncatula
Medtr5g011220 5.0kb downstream 5.0kb downstream 7877 true chr5: 3181523-3189399 Medicago truncatula
Medtr5g011220 5.0kb downstream 5.0kb downstream 5000 false chr5: 3181523-3186522 Medicago truncatula
Medtr5g011220 10.0kb upstream 10.0kb upstream 12877 true chr5: 3186523-3199399 Medicago truncatula
Medtr5g011220 10.0kb upstream 10.0kb upstream 10000 false chr5: 3189400-3199399 Medicago truncatula
Medtr5g011220 10.0kb downstream 10.0kb downstream 12877 true chr5: 3176523-3189399 Medicago truncatula
Medtr5g011220 10.0kb downstream 10.0kb downstream 10000 false chr5: 3176523-3186522 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312093 5265 Fabidae View MSA
124060834 5270 Rosid View MSA
123741079 5271 Pentapetalae View MSA
122790680 5272 Eudicot View MSA
122043689 5273 Angiosperm View MSA
121345999 5274 Embryophyte View MSA
123428179 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 32.219     High  
cufflinks 13.97     High Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 33.976     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 21.182     High  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain