Gene : Medtr5g012870 M. truncatula Mt4.0v1
Defline:  (1 of 8) PF05703//PF08458 - Auxin canalisation (Auxin_canalis) // Plant pleckstrin homology-like region (PH_2) Description:  auxin canalisation protein
Genomic Order:  626 Name:  ? Medtr5g012870
Secondary Identifier:  ? PAC:31090463
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g012870 0.5kb upstream 0.5kb upstream 3945 true chr5: 3949683-3953627 Medicago truncatula
Medtr5g012870 0.5kb upstream 0.5kb upstream 500 false chr5: 3953128-3953627 Medicago truncatula
Medtr5g012870 0.5kb downstream 0.5kb downstream 3945 true chr5: 3949183-3953127 Medicago truncatula
Medtr5g012870 0.5kb downstream 0.5kb downstream 500 false chr5: 3949183-3949682 Medicago truncatula
Medtr5g012870 1.0kb upstream 1.0kb upstream 4445 true chr5: 3949683-3954127 Medicago truncatula
Medtr5g012870 1.0kb upstream 1.0kb upstream 1000 false chr5: 3953128-3954127 Medicago truncatula
Medtr5g012870 1.0kb downstream 1.0kb downstream 4445 true chr5: 3948683-3953127 Medicago truncatula
Medtr5g012870 1.0kb downstream 1.0kb downstream 1000 false chr5: 3948683-3949682 Medicago truncatula
Medtr5g012870 2.0kb upstream 2.0kb upstream 5445 true chr5: 3949683-3955127 Medicago truncatula
Medtr5g012870 2.0kb upstream 2.0kb upstream 2000 false chr5: 3953128-3955127 Medicago truncatula
Medtr5g012870 2.0kb downstream 2.0kb downstream 5445 true chr5: 3947683-3953127 Medicago truncatula
Medtr5g012870 2.0kb downstream 2.0kb downstream 2000 false chr5: 3947683-3949682 Medicago truncatula
Medtr5g012870 5.0kb upstream 5.0kb upstream 8445 true chr5: 3949683-3958127 Medicago truncatula
Medtr5g012870 5.0kb upstream 5.0kb upstream 5000 false chr5: 3953128-3958127 Medicago truncatula
Medtr5g012870 5.0kb downstream 5.0kb downstream 8445 true chr5: 3944683-3953127 Medicago truncatula
Medtr5g012870 5.0kb downstream 5.0kb downstream 5000 false chr5: 3944683-3949682 Medicago truncatula
Medtr5g012870 10.0kb upstream 10.0kb upstream 13445 true chr5: 3949683-3963127 Medicago truncatula
Medtr5g012870 10.0kb upstream 10.0kb upstream 10000 false chr5: 3953128-3963127 Medicago truncatula
Medtr5g012870 10.0kb downstream 10.0kb downstream 13445 true chr5: 3939683-3953127 Medicago truncatula
Medtr5g012870 10.0kb downstream 10.0kb downstream 10000 false chr5: 3939683-3949682 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301283 5265 Fabidae View MSA
124050253 5270 Rosid View MSA
123741992 5271 Pentapetalae View MSA
122794510 5272 Eudicot View MSA
122048590 5273 Angiosperm View MSA
121311030 5274 Embryophyte View MSA
123348384 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.56        
cufflinks 4.164        
cufflinks 3.653        
cufflinks 0.987       Low
cufflinks 2.954        
cufflinks 1.548       Low
cufflinks 4.707        
cufflinks 2.927        
cufflinks 5.525       High

0 Strain