Gene : Medtr5g013480 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR10150 - DNA REPAIR ENDONUCLEASE XPF Description:  DNA repair endonuclease UVH1-like protein
Genomic Order:  671 Name:  ? Medtr5g013480
Secondary Identifier:  ? PAC:31085423
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g013480 0.5kb upstream 0.5kb upstream 6796 true chr5: 4278305-4285100 Medicago truncatula
Medtr5g013480 0.5kb upstream 0.5kb upstream 500 false chr5: 4284601-4285100 Medicago truncatula
Medtr5g013480 0.5kb downstream 0.5kb downstream 6796 true chr5: 4277805-4284600 Medicago truncatula
Medtr5g013480 0.5kb downstream 0.5kb downstream 500 false chr5: 4277805-4278304 Medicago truncatula
Medtr5g013480 1.0kb upstream 1.0kb upstream 7296 true chr5: 4278305-4285600 Medicago truncatula
Medtr5g013480 1.0kb upstream 1.0kb upstream 1000 false chr5: 4284601-4285600 Medicago truncatula
Medtr5g013480 1.0kb downstream 1.0kb downstream 7296 true chr5: 4277305-4284600 Medicago truncatula
Medtr5g013480 1.0kb downstream 1.0kb downstream 1000 false chr5: 4277305-4278304 Medicago truncatula
Medtr5g013480 2.0kb upstream 2.0kb upstream 8296 true chr5: 4278305-4286600 Medicago truncatula
Medtr5g013480 2.0kb upstream 2.0kb upstream 2000 false chr5: 4284601-4286600 Medicago truncatula
Medtr5g013480 2.0kb downstream 2.0kb downstream 8296 true chr5: 4276305-4284600 Medicago truncatula
Medtr5g013480 2.0kb downstream 2.0kb downstream 2000 false chr5: 4276305-4278304 Medicago truncatula
Medtr5g013480 5.0kb upstream 5.0kb upstream 11296 true chr5: 4278305-4289600 Medicago truncatula
Medtr5g013480 5.0kb upstream 5.0kb upstream 5000 false chr5: 4284601-4289600 Medicago truncatula
Medtr5g013480 5.0kb downstream 5.0kb downstream 11296 true chr5: 4273305-4284600 Medicago truncatula
Medtr5g013480 5.0kb downstream 5.0kb downstream 5000 false chr5: 4273305-4278304 Medicago truncatula
Medtr5g013480 10.0kb upstream 10.0kb upstream 16296 true chr5: 4278305-4294600 Medicago truncatula
Medtr5g013480 10.0kb upstream 10.0kb upstream 10000 false chr5: 4284601-4294600 Medicago truncatula
Medtr5g013480 10.0kb downstream 10.0kb downstream 16296 true chr5: 4268305-4284600 Medicago truncatula
Medtr5g013480 10.0kb downstream 10.0kb downstream 10000 false chr5: 4268305-4278304 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026556 5273 Angiosperm View MSA
122312538 5265 Fabidae View MSA
124065772 5270 Rosid View MSA
123749861 5271 Pentapetalae View MSA
122792541 5272 Eudicot View MSA
121346199 5274 Embryophyte View MSA
123424869 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.921        
cufflinks 1.032        
cufflinks 1.041        
cufflinks 0.292       Low
cufflinks 1.124        
cufflinks 0.288       Low
cufflinks 0.782        
cufflinks 0.723        
cufflinks 0.682        

0 Strain