Gene : Medtr5g006890 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10887:SF362 - RNA HELICASE SDE3-RELATED Description:  RNA helicase SDE3-like protein
Genomic Order:  168 Name:  ? Medtr5g006890
Secondary Identifier:  ? PAC:31088697
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g006890 0.5kb upstream 0.5kb upstream 4905 true chr5: 1124601-1129505 Medicago truncatula
Medtr5g006890 0.5kb upstream 0.5kb upstream 500 false chr5: 1124601-1125100 Medicago truncatula
Medtr5g006890 0.5kb downstream 0.5kb downstream 4905 true chr5: 1125101-1130005 Medicago truncatula
Medtr5g006890 0.5kb downstream 0.5kb downstream 500 false chr5: 1129506-1130005 Medicago truncatula
Medtr5g006890 1.0kb upstream 1.0kb upstream 5405 true chr5: 1124101-1129505 Medicago truncatula
Medtr5g006890 1.0kb upstream 1.0kb upstream 1000 false chr5: 1124101-1125100 Medicago truncatula
Medtr5g006890 1.0kb downstream 1.0kb downstream 5405 true chr5: 1125101-1130505 Medicago truncatula
Medtr5g006890 1.0kb downstream 1.0kb downstream 1000 false chr5: 1129506-1130505 Medicago truncatula
Medtr5g006890 2.0kb upstream 2.0kb upstream 6405 true chr5: 1123101-1129505 Medicago truncatula
Medtr5g006890 2.0kb upstream 2.0kb upstream 2000 false chr5: 1123101-1125100 Medicago truncatula
Medtr5g006890 2.0kb downstream 2.0kb downstream 6405 true chr5: 1125101-1131505 Medicago truncatula
Medtr5g006890 2.0kb downstream 2.0kb downstream 2000 false chr5: 1129506-1131505 Medicago truncatula
Medtr5g006890 5.0kb upstream 5.0kb upstream 9405 true chr5: 1120101-1129505 Medicago truncatula
Medtr5g006890 5.0kb upstream 5.0kb upstream 5000 false chr5: 1120101-1125100 Medicago truncatula
Medtr5g006890 5.0kb downstream 5.0kb downstream 9405 true chr5: 1125101-1134505 Medicago truncatula
Medtr5g006890 5.0kb downstream 5.0kb downstream 5000 false chr5: 1129506-1134505 Medicago truncatula
Medtr5g006890 10.0kb upstream 10.0kb upstream 14405 true chr5: 1115101-1129505 Medicago truncatula
Medtr5g006890 10.0kb upstream 10.0kb upstream 10000 false chr5: 1115101-1125100 Medicago truncatula
Medtr5g006890 10.0kb downstream 10.0kb downstream 14405 true chr5: 1125101-1139505 Medicago truncatula
Medtr5g006890 10.0kb downstream 10.0kb downstream 10000 false chr5: 1129506-1139505 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302963 5265 Fabidae View MSA
124064664 5270 Rosid View MSA
123747903 5271 Pentapetalae View MSA
122786159 5272 Eudicot View MSA
122043025 5273 Angiosperm View MSA
123429092 5275 Viridiplantae View MSA
121348159 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.376        
cufflinks 0.734        
cufflinks 0.856        
cufflinks 0.085        
cufflinks 1.091        
cufflinks 0.008     Low Low
cufflinks 0.197        
cufflinks 0.694        
cufflinks 0.344        

0 Strain