Gene : Medtr5g008680 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10516//PTHR10516:SF292 - PEPTIDYL-PROLYL CIS-TRANS ISOMERASE Description:  FKBP-type peptidyl-prolyl cis-trans isomerase
Genomic Order:  313 Name:  ? Medtr5g008680
Secondary Identifier:  ? PAC:31088572
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g008680 0.5kb upstream 0.5kb upstream 5479 true chr5: 1867381-1872859 Medicago truncatula
Medtr5g008680 0.5kb upstream 0.5kb upstream 500 false chr5: 1867381-1867880 Medicago truncatula
Medtr5g008680 0.5kb downstream 0.5kb downstream 5479 true chr5: 1867881-1873359 Medicago truncatula
Medtr5g008680 0.5kb downstream 0.5kb downstream 500 false chr5: 1872860-1873359 Medicago truncatula
Medtr5g008680 1.0kb upstream 1.0kb upstream 5979 true chr5: 1866881-1872859 Medicago truncatula
Medtr5g008680 1.0kb upstream 1.0kb upstream 1000 false chr5: 1866881-1867880 Medicago truncatula
Medtr5g008680 1.0kb downstream 1.0kb downstream 5979 true chr5: 1867881-1873859 Medicago truncatula
Medtr5g008680 1.0kb downstream 1.0kb downstream 1000 false chr5: 1872860-1873859 Medicago truncatula
Medtr5g008680 2.0kb upstream 2.0kb upstream 6979 true chr5: 1865881-1872859 Medicago truncatula
Medtr5g008680 2.0kb upstream 2.0kb upstream 2000 false chr5: 1865881-1867880 Medicago truncatula
Medtr5g008680 2.0kb downstream 2.0kb downstream 6979 true chr5: 1867881-1874859 Medicago truncatula
Medtr5g008680 2.0kb downstream 2.0kb downstream 2000 false chr5: 1872860-1874859 Medicago truncatula
Medtr5g008680 5.0kb upstream 5.0kb upstream 9979 true chr5: 1862881-1872859 Medicago truncatula
Medtr5g008680 5.0kb upstream 5.0kb upstream 5000 false chr5: 1862881-1867880 Medicago truncatula
Medtr5g008680 5.0kb downstream 5.0kb downstream 9979 true chr5: 1867881-1877859 Medicago truncatula
Medtr5g008680 5.0kb downstream 5.0kb downstream 5000 false chr5: 1872860-1877859 Medicago truncatula
Medtr5g008680 10.0kb upstream 10.0kb upstream 14979 true chr5: 1857881-1872859 Medicago truncatula
Medtr5g008680 10.0kb upstream 10.0kb upstream 10000 false chr5: 1857881-1867880 Medicago truncatula
Medtr5g008680 10.0kb downstream 10.0kb downstream 14979 true chr5: 1867881-1882859 Medicago truncatula
Medtr5g008680 10.0kb downstream 10.0kb downstream 10000 false chr5: 1872860-1882859 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309221 5265 Fabidae View MSA
124063880 5270 Rosid View MSA
123749293 5271 Pentapetalae View MSA
122796238 5272 Eudicot View MSA
122047643 5273 Angiosperm View MSA
123428998 5275 Viridiplantae View MSA
121346019 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.227        
cufflinks 9.355        
cufflinks 9.3        
cufflinks 4.528       Low
cufflinks 15.669     High High
cufflinks 3.308       Low
cufflinks 7.741        
cufflinks 10.874     High  
cufflinks 5.595        

0 Strain