Gene : Medtr5g008890 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG0130 - RNA-binding protein RBM8/Tsunagi (RRM superfamily) Description:  RNA-binding (RRM/RBD/RNP motif) family protein
Genomic Order:  328 Name:  ? Medtr5g008890
Secondary Identifier:  ? PAC:31088500
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g008890 0.5kb upstream 0.5kb upstream 5060 true chr5: 1976257-1981316 Medicago truncatula
Medtr5g008890 0.5kb upstream 0.5kb upstream 500 false chr5: 1976257-1976756 Medicago truncatula
Medtr5g008890 0.5kb downstream 0.5kb downstream 5060 true chr5: 1976757-1981816 Medicago truncatula
Medtr5g008890 0.5kb downstream 0.5kb downstream 500 false chr5: 1981317-1981816 Medicago truncatula
Medtr5g008890 1.0kb upstream 1.0kb upstream 5560 true chr5: 1975757-1981316 Medicago truncatula
Medtr5g008890 1.0kb upstream 1.0kb upstream 1000 false chr5: 1975757-1976756 Medicago truncatula
Medtr5g008890 1.0kb downstream 1.0kb downstream 5560 true chr5: 1976757-1982316 Medicago truncatula
Medtr5g008890 1.0kb downstream 1.0kb downstream 1000 false chr5: 1981317-1982316 Medicago truncatula
Medtr5g008890 2.0kb upstream 2.0kb upstream 6560 true chr5: 1974757-1981316 Medicago truncatula
Medtr5g008890 2.0kb upstream 2.0kb upstream 2000 false chr5: 1974757-1976756 Medicago truncatula
Medtr5g008890 2.0kb downstream 2.0kb downstream 6560 true chr5: 1976757-1983316 Medicago truncatula
Medtr5g008890 2.0kb downstream 2.0kb downstream 2000 false chr5: 1981317-1983316 Medicago truncatula
Medtr5g008890 5.0kb upstream 5.0kb upstream 9560 true chr5: 1971757-1981316 Medicago truncatula
Medtr5g008890 5.0kb upstream 5.0kb upstream 5000 false chr5: 1971757-1976756 Medicago truncatula
Medtr5g008890 5.0kb downstream 5.0kb downstream 9560 true chr5: 1976757-1986316 Medicago truncatula
Medtr5g008890 5.0kb downstream 5.0kb downstream 5000 false chr5: 1981317-1986316 Medicago truncatula
Medtr5g008890 10.0kb upstream 10.0kb upstream 14560 true chr5: 1966757-1981316 Medicago truncatula
Medtr5g008890 10.0kb upstream 10.0kb upstream 10000 false chr5: 1966757-1976756 Medicago truncatula
Medtr5g008890 10.0kb downstream 10.0kb downstream 14560 true chr5: 1976757-1991316 Medicago truncatula
Medtr5g008890 10.0kb downstream 10.0kb downstream 10000 false chr5: 1981317-1991316 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302871 5265 Fabidae View MSA
124067815 5270 Rosid View MSA
123738959 5271 Pentapetalae View MSA
122793356 5272 Eudicot View MSA
122042715 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121347293 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.272       Low
cufflinks 10.653     High  
cufflinks 9.928     High  
cufflinks 45.414     High High
cufflinks 13.484     High  
cufflinks 25.24     High  
cufflinks 14.758     High  
cufflinks 10.871     High  
cufflinks 26.79     High  

0 Strain