Gene : Medtr5g009620 M. truncatula Mt4.0v1
Defline:  (1 of 5) PTHR31194//PTHR31194:SF16 - SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR Description:  ethylene response factor
Genomic Order:  385 Name:  ? Medtr5g009620
Secondary Identifier:  ? PAC:31090412
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g009620 0.5kb upstream 0.5kb upstream 2494 true chr5: 2360490-2362983 Medicago truncatula
Medtr5g009620 0.5kb upstream 0.5kb upstream 500 false chr5: 2362484-2362983 Medicago truncatula
Medtr5g009620 0.5kb downstream 0.5kb downstream 2494 true chr5: 2359990-2362483 Medicago truncatula
Medtr5g009620 0.5kb downstream 0.5kb downstream 500 false chr5: 2359990-2360489 Medicago truncatula
Medtr5g009620 1.0kb upstream 1.0kb upstream 2994 true chr5: 2360490-2363483 Medicago truncatula
Medtr5g009620 1.0kb upstream 1.0kb upstream 1000 false chr5: 2362484-2363483 Medicago truncatula
Medtr5g009620 1.0kb downstream 1.0kb downstream 2994 true chr5: 2359490-2362483 Medicago truncatula
Medtr5g009620 1.0kb downstream 1.0kb downstream 1000 false chr5: 2359490-2360489 Medicago truncatula
Medtr5g009620 2.0kb upstream 2.0kb upstream 3994 true chr5: 2360490-2364483 Medicago truncatula
Medtr5g009620 2.0kb upstream 2.0kb upstream 2000 false chr5: 2362484-2364483 Medicago truncatula
Medtr5g009620 2.0kb downstream 2.0kb downstream 3994 true chr5: 2358490-2362483 Medicago truncatula
Medtr5g009620 2.0kb downstream 2.0kb downstream 2000 false chr5: 2358490-2360489 Medicago truncatula
Medtr5g009620 5.0kb upstream 5.0kb upstream 6994 true chr5: 2360490-2367483 Medicago truncatula
Medtr5g009620 5.0kb upstream 5.0kb upstream 5000 false chr5: 2362484-2367483 Medicago truncatula
Medtr5g009620 5.0kb downstream 5.0kb downstream 6994 true chr5: 2355490-2362483 Medicago truncatula
Medtr5g009620 5.0kb downstream 5.0kb downstream 5000 false chr5: 2355490-2360489 Medicago truncatula
Medtr5g009620 10.0kb upstream 10.0kb upstream 11994 true chr5: 2360490-2372483 Medicago truncatula
Medtr5g009620 10.0kb upstream 10.0kb upstream 10000 false chr5: 2362484-2372483 Medicago truncatula
Medtr5g009620 10.0kb downstream 10.0kb downstream 11994 true chr5: 2350490-2362483 Medicago truncatula
Medtr5g009620 10.0kb downstream 10.0kb downstream 10000 false chr5: 2350490-2360489 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313302 5265 Fabidae View MSA
124071112 5270 Rosid View MSA
123744943 5271 Pentapetalae View MSA
122797737 5272 Eudicot View MSA
122048577 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121351000 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.045        
cufflinks 10.084     High High
cufflinks 4.521        
cufflinks 0.354       Low
cufflinks 11.586     High High
cufflinks 0.245       Low
cufflinks 1.567        
cufflinks 5.612        
cufflinks 0.914        

0 Strain