Gene : Medtr5g064840 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF05929 - Phage capsid scaffolding protein (GPO) serine peptidase Description:  phage capsid scaffolding protein (GPO) serine peptidase
Genomic Order:  3463 Name:  ? Medtr5g064840
Secondary Identifier:  ? PAC:31085357
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g064840 0.5kb upstream 0.5kb upstream 2670 true chr5: 27242784-27245453 Medicago truncatula
Medtr5g064840 0.5kb upstream 0.5kb upstream 500 false chr5: 27242784-27243283 Medicago truncatula
Medtr5g064840 0.5kb downstream 0.5kb downstream 2670 true chr5: 27243284-27245953 Medicago truncatula
Medtr5g064840 0.5kb downstream 0.5kb downstream 500 false chr5: 27245454-27245953 Medicago truncatula
Medtr5g064840 1.0kb upstream 1.0kb upstream 3170 true chr5: 27242284-27245453 Medicago truncatula
Medtr5g064840 1.0kb upstream 1.0kb upstream 1000 false chr5: 27242284-27243283 Medicago truncatula
Medtr5g064840 1.0kb downstream 1.0kb downstream 3170 true chr5: 27243284-27246453 Medicago truncatula
Medtr5g064840 1.0kb downstream 1.0kb downstream 1000 false chr5: 27245454-27246453 Medicago truncatula
Medtr5g064840 2.0kb upstream 2.0kb upstream 4170 true chr5: 27241284-27245453 Medicago truncatula
Medtr5g064840 2.0kb upstream 2.0kb upstream 2000 false chr5: 27241284-27243283 Medicago truncatula
Medtr5g064840 2.0kb downstream 2.0kb downstream 4170 true chr5: 27243284-27247453 Medicago truncatula
Medtr5g064840 2.0kb downstream 2.0kb downstream 2000 false chr5: 27245454-27247453 Medicago truncatula
Medtr5g064840 5.0kb upstream 5.0kb upstream 7170 true chr5: 27238284-27245453 Medicago truncatula
Medtr5g064840 5.0kb upstream 5.0kb upstream 5000 false chr5: 27238284-27243283 Medicago truncatula
Medtr5g064840 5.0kb downstream 5.0kb downstream 7170 true chr5: 27243284-27250453 Medicago truncatula
Medtr5g064840 5.0kb downstream 5.0kb downstream 5000 false chr5: 27245454-27250453 Medicago truncatula
Medtr5g064840 10.0kb upstream 10.0kb upstream 12170 true chr5: 27233284-27245453 Medicago truncatula
Medtr5g064840 10.0kb upstream 10.0kb upstream 10000 false chr5: 27233284-27243283 Medicago truncatula
Medtr5g064840 10.0kb downstream 10.0kb downstream 12170 true chr5: 27243284-27255453 Medicago truncatula
Medtr5g064840 10.0kb downstream 10.0kb downstream 10000 false chr5: 27245454-27255453 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028643 5273 Angiosperm View MSA
122314045 5265 Fabidae View MSA
124070225 5270 Rosid View MSA
123752743 5271 Pentapetalae View MSA
122796561 5272 Eudicot View MSA
121298100 5274 Embryophyte View MSA
123336097 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.009       High
cufflinks 2.653        
cufflinks 1.147        
cufflinks 2.032        
cufflinks 1.471        
cufflinks 4.245        
cufflinks 3.417        
cufflinks 0.782       Low
cufflinks 1.311        

0 Strain