Gene : Medtr5g065270 M. truncatula Mt4.0v1
Defline:  (1 of 1) 6.3.2.6 - Phosphoribosylaminoimidazolesuccinocarboxamide synthase / SAICARs Description:  phosphoribosylaminoimidazole-succinocarboxamide synthase
Genomic Order:  3491 Name:  ? Medtr5g065270
Secondary Identifier:  ? PAC:31085718
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6124 Medicago truncatula pathologic  
Mtruncatula PWY-841 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g065270 0.5kb upstream 0.5kb upstream 5427 true chr5: 27434878-27440304 Medicago truncatula
Medtr5g065270 0.5kb upstream 0.5kb upstream 500 false chr5: 27439805-27440304 Medicago truncatula
Medtr5g065270 0.5kb downstream 0.5kb downstream 5427 true chr5: 27434378-27439804 Medicago truncatula
Medtr5g065270 0.5kb downstream 0.5kb downstream 500 false chr5: 27434378-27434877 Medicago truncatula
Medtr5g065270 1.0kb upstream 1.0kb upstream 5927 true chr5: 27434878-27440804 Medicago truncatula
Medtr5g065270 1.0kb upstream 1.0kb upstream 1000 false chr5: 27439805-27440804 Medicago truncatula
Medtr5g065270 1.0kb downstream 1.0kb downstream 5927 true chr5: 27433878-27439804 Medicago truncatula
Medtr5g065270 1.0kb downstream 1.0kb downstream 1000 false chr5: 27433878-27434877 Medicago truncatula
Medtr5g065270 2.0kb upstream 2.0kb upstream 6927 true chr5: 27434878-27441804 Medicago truncatula
Medtr5g065270 2.0kb upstream 2.0kb upstream 2000 false chr5: 27439805-27441804 Medicago truncatula
Medtr5g065270 2.0kb downstream 2.0kb downstream 6927 true chr5: 27432878-27439804 Medicago truncatula
Medtr5g065270 2.0kb downstream 2.0kb downstream 2000 false chr5: 27432878-27434877 Medicago truncatula
Medtr5g065270 5.0kb upstream 5.0kb upstream 9927 true chr5: 27434878-27444804 Medicago truncatula
Medtr5g065270 5.0kb upstream 5.0kb upstream 5000 false chr5: 27439805-27444804 Medicago truncatula
Medtr5g065270 5.0kb downstream 5.0kb downstream 9927 true chr5: 27429878-27439804 Medicago truncatula
Medtr5g065270 5.0kb downstream 5.0kb downstream 5000 false chr5: 27429878-27434877 Medicago truncatula
Medtr5g065270 10.0kb upstream 10.0kb upstream 14927 true chr5: 27434878-27449804 Medicago truncatula
Medtr5g065270 10.0kb upstream 10.0kb upstream 10000 false chr5: 27439805-27449804 Medicago truncatula
Medtr5g065270 10.0kb downstream 10.0kb downstream 14927 true chr5: 27424878-27439804 Medicago truncatula
Medtr5g065270 10.0kb downstream 10.0kb downstream 10000 false chr5: 27424878-27434877 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301932 5265 Fabidae View MSA
124065715 5270 Rosid View MSA
123739359 5271 Pentapetalae View MSA
122791298 5272 Eudicot View MSA
122044442 5273 Angiosperm View MSA
121346335 5274 Embryophyte View MSA
123424061 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.964        
cufflinks 1.228        
cufflinks 0.924        
cufflinks 0.438       Low
cufflinks 2.891       High
cufflinks 0.236       Low
cufflinks 0.93        
cufflinks 1.045        
cufflinks 2.177       High

0 Strain