Gene : Medtr5g045370 M. truncatula Mt4.0v1
Defline:  (1 of 2) PF16136 - Putative nuclear localisation signal (NINJA_B) Description:  ninja-family protein AFP1
Genomic Order:  2716 Name:  ? Medtr5g045370
Secondary Identifier:  ? PAC:31087109
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g045370 0.5kb upstream 0.5kb upstream 5936 true chr5: 19912302-19918237 Medicago truncatula
Medtr5g045370 0.5kb upstream 0.5kb upstream 500 false chr5: 19912302-19912801 Medicago truncatula
Medtr5g045370 0.5kb downstream 0.5kb downstream 5936 true chr5: 19912802-19918737 Medicago truncatula
Medtr5g045370 0.5kb downstream 0.5kb downstream 500 false chr5: 19918238-19918737 Medicago truncatula
Medtr5g045370 1.0kb upstream 1.0kb upstream 6436 true chr5: 19911802-19918237 Medicago truncatula
Medtr5g045370 1.0kb upstream 1.0kb upstream 1000 false chr5: 19911802-19912801 Medicago truncatula
Medtr5g045370 1.0kb downstream 1.0kb downstream 6436 true chr5: 19912802-19919237 Medicago truncatula
Medtr5g045370 1.0kb downstream 1.0kb downstream 1000 false chr5: 19918238-19919237 Medicago truncatula
Medtr5g045370 2.0kb upstream 2.0kb upstream 7436 true chr5: 19910802-19918237 Medicago truncatula
Medtr5g045370 2.0kb upstream 2.0kb upstream 2000 false chr5: 19910802-19912801 Medicago truncatula
Medtr5g045370 2.0kb downstream 2.0kb downstream 7436 true chr5: 19912802-19920237 Medicago truncatula
Medtr5g045370 2.0kb downstream 2.0kb downstream 2000 false chr5: 19918238-19920237 Medicago truncatula
Medtr5g045370 5.0kb upstream 5.0kb upstream 10436 true chr5: 19907802-19918237 Medicago truncatula
Medtr5g045370 5.0kb upstream 5.0kb upstream 5000 false chr5: 19907802-19912801 Medicago truncatula
Medtr5g045370 5.0kb downstream 5.0kb downstream 10436 true chr5: 19912802-19923237 Medicago truncatula
Medtr5g045370 5.0kb downstream 5.0kb downstream 5000 false chr5: 19918238-19923237 Medicago truncatula
Medtr5g045370 10.0kb upstream 10.0kb upstream 15436 true chr5: 19902802-19918237 Medicago truncatula
Medtr5g045370 10.0kb upstream 10.0kb upstream 10000 false chr5: 19902802-19912801 Medicago truncatula
Medtr5g045370 10.0kb downstream 10.0kb downstream 15436 true chr5: 19912802-19928237 Medicago truncatula
Medtr5g045370 10.0kb downstream 10.0kb downstream 10000 false chr5: 19918238-19928237 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122315194 5265 Fabidae View MSA
124071046 5270 Rosid View MSA
123753389 5271 Pentapetalae View MSA
122792096 5272 Eudicot View MSA
122050177 5273 Angiosperm View MSA
121311781 5274 Embryophyte View MSA
123349031 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.723       High
cufflinks 0.427        
cufflinks 0.256        
cufflinks 0.104       Low
cufflinks 0.335        
cufflinks 0.043     Low Low
cufflinks 0.44        
cufflinks 0.317        
cufflinks 0.515        

0 Strain