Gene : Medtr5g054950 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR31419:SF2 - AUXIN EFFLUX CARRIER FAMILY PROTEIN Description:  auxin efflux carrier family protein
Genomic Order:  2980 Name:  ? Medtr5g054950
Secondary Identifier:  ? PAC:31089962
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g054950 0.5kb upstream 0.5kb upstream 2810 true chr5: 22623226-22626035 Medicago truncatula
Medtr5g054950 0.5kb upstream 0.5kb upstream 500 false chr5: 22625536-22626035 Medicago truncatula
Medtr5g054950 0.5kb downstream 0.5kb downstream 2810 true chr5: 22622726-22625535 Medicago truncatula
Medtr5g054950 0.5kb downstream 0.5kb downstream 500 false chr5: 22622726-22623225 Medicago truncatula
Medtr5g054950 1.0kb upstream 1.0kb upstream 3310 true chr5: 22623226-22626535 Medicago truncatula
Medtr5g054950 1.0kb upstream 1.0kb upstream 1000 false chr5: 22625536-22626535 Medicago truncatula
Medtr5g054950 1.0kb downstream 1.0kb downstream 3310 true chr5: 22622226-22625535 Medicago truncatula
Medtr5g054950 1.0kb downstream 1.0kb downstream 1000 false chr5: 22622226-22623225 Medicago truncatula
Medtr5g054950 2.0kb upstream 2.0kb upstream 4310 true chr5: 22623226-22627535 Medicago truncatula
Medtr5g054950 2.0kb upstream 2.0kb upstream 2000 false chr5: 22625536-22627535 Medicago truncatula
Medtr5g054950 2.0kb downstream 2.0kb downstream 4310 true chr5: 22621226-22625535 Medicago truncatula
Medtr5g054950 2.0kb downstream 2.0kb downstream 2000 false chr5: 22621226-22623225 Medicago truncatula
Medtr5g054950 5.0kb upstream 5.0kb upstream 7310 true chr5: 22623226-22630535 Medicago truncatula
Medtr5g054950 5.0kb upstream 5.0kb upstream 5000 false chr5: 22625536-22630535 Medicago truncatula
Medtr5g054950 5.0kb downstream 5.0kb downstream 7310 true chr5: 22618226-22625535 Medicago truncatula
Medtr5g054950 5.0kb downstream 5.0kb downstream 5000 false chr5: 22618226-22623225 Medicago truncatula
Medtr5g054950 10.0kb upstream 10.0kb upstream 12310 true chr5: 22623226-22635535 Medicago truncatula
Medtr5g054950 10.0kb upstream 10.0kb upstream 10000 false chr5: 22625536-22635535 Medicago truncatula
Medtr5g054950 10.0kb downstream 10.0kb downstream 12310 true chr5: 22613226-22625535 Medicago truncatula
Medtr5g054950 10.0kb downstream 10.0kb downstream 10000 false chr5: 22613226-22623225 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304873 5265 Fabidae View MSA
124070686 5270 Rosid View MSA
123745626 5271 Pentapetalae View MSA
122796899 5272 Eudicot View MSA
122045179 5273 Angiosperm View MSA
123429004 5275 Viridiplantae View MSA
121343844 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.434        
cufflinks 6.312        
cufflinks 5.838        
cufflinks 7.751       High
cufflinks 7.79       High
cufflinks 3.557       Low
cufflinks 5.65        
cufflinks 5.229        
cufflinks 5.639        

0 Strain