Gene : Medtr5g040650 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR23012//PTHR23012:SF57 - MEMBRANE ASSOCIATED RING FINGER Description:  RING/FYVE/PHD zinc finger protein
Genomic Order:  2453 Name:  ? Medtr5g040650
Secondary Identifier:  ? PAC:31085887
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g040650 0.5kb upstream 0.5kb upstream 5559 true chr5: 17863995-17869553 Medicago truncatula
Medtr5g040650 0.5kb upstream 0.5kb upstream 500 false chr5: 17869054-17869553 Medicago truncatula
Medtr5g040650 0.5kb downstream 0.5kb downstream 5559 true chr5: 17863495-17869053 Medicago truncatula
Medtr5g040650 0.5kb downstream 0.5kb downstream 500 false chr5: 17863495-17863994 Medicago truncatula
Medtr5g040650 1.0kb upstream 1.0kb upstream 6059 true chr5: 17863995-17870053 Medicago truncatula
Medtr5g040650 1.0kb upstream 1.0kb upstream 1000 false chr5: 17869054-17870053 Medicago truncatula
Medtr5g040650 1.0kb downstream 1.0kb downstream 6059 true chr5: 17862995-17869053 Medicago truncatula
Medtr5g040650 1.0kb downstream 1.0kb downstream 1000 false chr5: 17862995-17863994 Medicago truncatula
Medtr5g040650 2.0kb upstream 2.0kb upstream 7059 true chr5: 17863995-17871053 Medicago truncatula
Medtr5g040650 2.0kb upstream 2.0kb upstream 2000 false chr5: 17869054-17871053 Medicago truncatula
Medtr5g040650 2.0kb downstream 2.0kb downstream 7059 true chr5: 17861995-17869053 Medicago truncatula
Medtr5g040650 2.0kb downstream 2.0kb downstream 2000 false chr5: 17861995-17863994 Medicago truncatula
Medtr5g040650 5.0kb upstream 5.0kb upstream 10059 true chr5: 17863995-17874053 Medicago truncatula
Medtr5g040650 5.0kb upstream 5.0kb upstream 5000 false chr5: 17869054-17874053 Medicago truncatula
Medtr5g040650 5.0kb downstream 5.0kb downstream 10059 true chr5: 17858995-17869053 Medicago truncatula
Medtr5g040650 5.0kb downstream 5.0kb downstream 5000 false chr5: 17858995-17863994 Medicago truncatula
Medtr5g040650 10.0kb upstream 10.0kb upstream 15059 true chr5: 17863995-17879053 Medicago truncatula
Medtr5g040650 10.0kb upstream 10.0kb upstream 10000 false chr5: 17869054-17879053 Medicago truncatula
Medtr5g040650 10.0kb downstream 10.0kb downstream 15059 true chr5: 17853995-17869053 Medicago truncatula
Medtr5g040650 10.0kb downstream 10.0kb downstream 10000 false chr5: 17853995-17863994 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313132 5265 Fabidae View MSA
124070525 5270 Rosid View MSA
123751414 5271 Pentapetalae View MSA
122787187 5272 Eudicot View MSA
122048569 5273 Angiosperm View MSA
121311024 5274 Embryophyte View MSA
123428817 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.767        
cufflinks 8.384        
cufflinks 8.518        
cufflinks 22.673     High High
cufflinks 5.832       Low
cufflinks 16.43     High  
cufflinks 10.649     High  
cufflinks 7.338        
cufflinks 19.811     High High

0 Strain