Gene : Medtr5g039700 M. truncatula Mt4.0v1
Defline:  (1 of 47) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  2401 Name:  ? Medtr5g039700
Secondary Identifier:  ? PAC:31091914
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g039700 0.5kb upstream 0.5kb upstream 3110 true chr5: 17486554-17489663 Medicago truncatula
Medtr5g039700 0.5kb upstream 0.5kb upstream 500 false chr5: 17489164-17489663 Medicago truncatula
Medtr5g039700 0.5kb downstream 0.5kb downstream 3110 true chr5: 17486054-17489163 Medicago truncatula
Medtr5g039700 0.5kb downstream 0.5kb downstream 500 false chr5: 17486054-17486553 Medicago truncatula
Medtr5g039700 1.0kb upstream 1.0kb upstream 3610 true chr5: 17486554-17490163 Medicago truncatula
Medtr5g039700 1.0kb upstream 1.0kb upstream 1000 false chr5: 17489164-17490163 Medicago truncatula
Medtr5g039700 1.0kb downstream 1.0kb downstream 3610 true chr5: 17485554-17489163 Medicago truncatula
Medtr5g039700 1.0kb downstream 1.0kb downstream 1000 false chr5: 17485554-17486553 Medicago truncatula
Medtr5g039700 2.0kb upstream 2.0kb upstream 4610 true chr5: 17486554-17491163 Medicago truncatula
Medtr5g039700 2.0kb upstream 2.0kb upstream 2000 false chr5: 17489164-17491163 Medicago truncatula
Medtr5g039700 2.0kb downstream 2.0kb downstream 4610 true chr5: 17484554-17489163 Medicago truncatula
Medtr5g039700 2.0kb downstream 2.0kb downstream 2000 false chr5: 17484554-17486553 Medicago truncatula
Medtr5g039700 5.0kb upstream 5.0kb upstream 7610 true chr5: 17486554-17494163 Medicago truncatula
Medtr5g039700 5.0kb upstream 5.0kb upstream 5000 false chr5: 17489164-17494163 Medicago truncatula
Medtr5g039700 5.0kb downstream 5.0kb downstream 7610 true chr5: 17481554-17489163 Medicago truncatula
Medtr5g039700 5.0kb downstream 5.0kb downstream 5000 false chr5: 17481554-17486553 Medicago truncatula
Medtr5g039700 10.0kb upstream 10.0kb upstream 12610 true chr5: 17486554-17499163 Medicago truncatula
Medtr5g039700 10.0kb upstream 10.0kb upstream 10000 false chr5: 17489164-17499163 Medicago truncatula
Medtr5g039700 10.0kb downstream 10.0kb downstream 12610 true chr5: 17476554-17489163 Medicago truncatula
Medtr5g039700 10.0kb downstream 10.0kb downstream 10000 false chr5: 17476554-17486553 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040975 5273 Angiosperm View MSA
122311826 5265 Fabidae View MSA
124067811 5270 Rosid View MSA
123746701 5271 Pentapetalae View MSA
122790264 5272 Eudicot View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.659        
cufflinks 1.399        
cufflinks 1.776        
cufflinks 0.109       Low
cufflinks 2.136        
cufflinks 0.023     Low Low
cufflinks 0.375        
cufflinks 1.165        
cufflinks 0.434        

0 Strain