Gene : Medtr5g041300 M. truncatula Mt4.0v1
Defline:  (1 of 11) PF00421 - Photosystem II protein (PSII) Description:  photosystem II CP43 chlorophyll apoprotein
Genomic Order:  2490 Name:  ? Medtr5g041300
Secondary Identifier:  ? PAC:31086168
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g041300 0.5kb upstream 0.5kb upstream 1622 true chr5: 18151256-18152877 Medicago truncatula
Medtr5g041300 0.5kb upstream 0.5kb upstream 500 false chr5: 18152378-18152877 Medicago truncatula
Medtr5g041300 0.5kb downstream 0.5kb downstream 1622 true chr5: 18150756-18152377 Medicago truncatula
Medtr5g041300 0.5kb downstream 0.5kb downstream 500 false chr5: 18150756-18151255 Medicago truncatula
Medtr5g041300 1.0kb upstream 1.0kb upstream 2122 true chr5: 18151256-18153377 Medicago truncatula
Medtr5g041300 1.0kb upstream 1.0kb upstream 1000 false chr5: 18152378-18153377 Medicago truncatula
Medtr5g041300 1.0kb downstream 1.0kb downstream 2122 true chr5: 18150256-18152377 Medicago truncatula
Medtr5g041300 1.0kb downstream 1.0kb downstream 1000 false chr5: 18150256-18151255 Medicago truncatula
Medtr5g041300 2.0kb upstream 2.0kb upstream 3122 true chr5: 18151256-18154377 Medicago truncatula
Medtr5g041300 2.0kb upstream 2.0kb upstream 2000 false chr5: 18152378-18154377 Medicago truncatula
Medtr5g041300 2.0kb downstream 2.0kb downstream 3122 true chr5: 18149256-18152377 Medicago truncatula
Medtr5g041300 2.0kb downstream 2.0kb downstream 2000 false chr5: 18149256-18151255 Medicago truncatula
Medtr5g041300 5.0kb upstream 5.0kb upstream 6122 true chr5: 18151256-18157377 Medicago truncatula
Medtr5g041300 5.0kb upstream 5.0kb upstream 5000 false chr5: 18152378-18157377 Medicago truncatula
Medtr5g041300 5.0kb downstream 5.0kb downstream 6122 true chr5: 18146256-18152377 Medicago truncatula
Medtr5g041300 5.0kb downstream 5.0kb downstream 5000 false chr5: 18146256-18151255 Medicago truncatula
Medtr5g041300 10.0kb upstream 10.0kb upstream 11122 true chr5: 18151256-18162377 Medicago truncatula
Medtr5g041300 10.0kb upstream 10.0kb upstream 10000 false chr5: 18152378-18162377 Medicago truncatula
Medtr5g041300 10.0kb downstream 10.0kb downstream 11122 true chr5: 18141256-18152377 Medicago truncatula
Medtr5g041300 10.0kb downstream 10.0kb downstream 10000 false chr5: 18141256-18151255 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122263511 5265 Fabidae Singleton cluster - no MSA
124051318 5270 Rosid View MSA
123753691 5271 Pentapetalae View MSA
122787525 5272 Eudicot View MSA
122051576 5273 Angiosperm View MSA
123428978 5275 Viridiplantae View MSA
121350250 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.019     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain