Gene : Medtr5g030020 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG0106//KOG0110//KOG0131 - Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) // RNA-binding protein (RRM superfamily) // Splicing factor 3b, subunit 4 Description:  RNA-binding (RRM/RBD/RNP motif) family protein
Genomic Order:  1783 Name:  ? Medtr5g030020
Secondary Identifier:  ? PAC:31090211
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g030020 0.5kb upstream 0.5kb upstream 5962 true chr5: 12622359-12628320 Medicago truncatula
Medtr5g030020 0.5kb upstream 0.5kb upstream 500 false chr5: 12627821-12628320 Medicago truncatula
Medtr5g030020 0.5kb downstream 0.5kb downstream 5962 true chr5: 12621859-12627820 Medicago truncatula
Medtr5g030020 0.5kb downstream 0.5kb downstream 500 false chr5: 12621859-12622358 Medicago truncatula
Medtr5g030020 1.0kb upstream 1.0kb upstream 6462 true chr5: 12622359-12628820 Medicago truncatula
Medtr5g030020 1.0kb upstream 1.0kb upstream 1000 false chr5: 12627821-12628820 Medicago truncatula
Medtr5g030020 1.0kb downstream 1.0kb downstream 6462 true chr5: 12621359-12627820 Medicago truncatula
Medtr5g030020 1.0kb downstream 1.0kb downstream 1000 false chr5: 12621359-12622358 Medicago truncatula
Medtr5g030020 2.0kb upstream 2.0kb upstream 7462 true chr5: 12622359-12629820 Medicago truncatula
Medtr5g030020 2.0kb upstream 2.0kb upstream 2000 false chr5: 12627821-12629820 Medicago truncatula
Medtr5g030020 2.0kb downstream 2.0kb downstream 7462 true chr5: 12620359-12627820 Medicago truncatula
Medtr5g030020 2.0kb downstream 2.0kb downstream 2000 false chr5: 12620359-12622358 Medicago truncatula
Medtr5g030020 5.0kb upstream 5.0kb upstream 10462 true chr5: 12622359-12632820 Medicago truncatula
Medtr5g030020 5.0kb upstream 5.0kb upstream 5000 false chr5: 12627821-12632820 Medicago truncatula
Medtr5g030020 5.0kb downstream 5.0kb downstream 10462 true chr5: 12617359-12627820 Medicago truncatula
Medtr5g030020 5.0kb downstream 5.0kb downstream 5000 false chr5: 12617359-12622358 Medicago truncatula
Medtr5g030020 10.0kb upstream 10.0kb upstream 15462 true chr5: 12622359-12637820 Medicago truncatula
Medtr5g030020 10.0kb upstream 10.0kb upstream 10000 false chr5: 12627821-12637820 Medicago truncatula
Medtr5g030020 10.0kb downstream 10.0kb downstream 15462 true chr5: 12612359-12627820 Medicago truncatula
Medtr5g030020 10.0kb downstream 10.0kb downstream 10000 false chr5: 12612359-12622358 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310778 5265 Fabidae View MSA
124064961 5270 Rosid View MSA
123740281 5271 Pentapetalae View MSA
122787743 5272 Eudicot View MSA
122043874 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121310205 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.416        
cufflinks 27.274     High High
cufflinks 20.476     High  
cufflinks 0.486        
cufflinks 25.92     High High
cufflinks 0.168       Low
cufflinks 0.623        
cufflinks 26.86     High High
cufflinks 0.275        

0 Strain