Gene : Medtr5g032520 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR11945:SF179 - MADS-BOX PROTEIN SVP Description:  MADS-box transcription factor
Genomic Order:  1949 Name:  ? Medtr5g032520
Secondary Identifier:  ? PAC:31088793
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g032520 0.5kb upstream 0.5kb upstream 7374 true chr5: 13958481-13965854 Medicago truncatula
Medtr5g032520 0.5kb upstream 0.5kb upstream 500 false chr5: 13958481-13958980 Medicago truncatula
Medtr5g032520 0.5kb downstream 0.5kb downstream 7374 true chr5: 13958981-13966354 Medicago truncatula
Medtr5g032520 0.5kb downstream 0.5kb downstream 500 false chr5: 13965855-13966354 Medicago truncatula
Medtr5g032520 1.0kb upstream 1.0kb upstream 7874 true chr5: 13957981-13965854 Medicago truncatula
Medtr5g032520 1.0kb upstream 1.0kb upstream 1000 false chr5: 13957981-13958980 Medicago truncatula
Medtr5g032520 1.0kb downstream 1.0kb downstream 7874 true chr5: 13958981-13966854 Medicago truncatula
Medtr5g032520 1.0kb downstream 1.0kb downstream 1000 false chr5: 13965855-13966854 Medicago truncatula
Medtr5g032520 2.0kb upstream 2.0kb upstream 8874 true chr5: 13956981-13965854 Medicago truncatula
Medtr5g032520 2.0kb upstream 2.0kb upstream 2000 false chr5: 13956981-13958980 Medicago truncatula
Medtr5g032520 2.0kb downstream 2.0kb downstream 8874 true chr5: 13958981-13967854 Medicago truncatula
Medtr5g032520 2.0kb downstream 2.0kb downstream 2000 false chr5: 13965855-13967854 Medicago truncatula
Medtr5g032520 5.0kb upstream 5.0kb upstream 11874 true chr5: 13953981-13965854 Medicago truncatula
Medtr5g032520 5.0kb upstream 5.0kb upstream 5000 false chr5: 13953981-13958980 Medicago truncatula
Medtr5g032520 5.0kb downstream 5.0kb downstream 11874 true chr5: 13958981-13970854 Medicago truncatula
Medtr5g032520 5.0kb downstream 5.0kb downstream 5000 false chr5: 13965855-13970854 Medicago truncatula
Medtr5g032520 10.0kb upstream 10.0kb upstream 16874 true chr5: 13948981-13965854 Medicago truncatula
Medtr5g032520 10.0kb upstream 10.0kb upstream 10000 false chr5: 13948981-13958980 Medicago truncatula
Medtr5g032520 10.0kb downstream 10.0kb downstream 16874 true chr5: 13958981-13975854 Medicago truncatula
Medtr5g032520 10.0kb downstream 10.0kb downstream 10000 false chr5: 13965855-13975854 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306643 5265 Fabidae View MSA
124071999 5270 Rosid View MSA
123753664 5271 Pentapetalae View MSA
122797561 5272 Eudicot View MSA
122050867 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.419        
cufflinks 3.381       High
cufflinks 3.062        
cufflinks 0.82       Low
cufflinks 3.6       High
cufflinks 0.829       Low
cufflinks 1.259        
cufflinks 2.569        
cufflinks 1.784        

0 Strain