Gene : Medtr5g087480 M. truncatula Mt4.0v1
Defline:  (1 of 4) PTHR11527:SF156 - HEAT SHOCK FAMILY PROTEIN Description:  hsp20/alpha crystallin family protein
Genomic Order:  4923 Name:  ? Medtr5g087480
Secondary Identifier:  ? PAC:31086764
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g087480 0.5kb upstream 0.5kb upstream 1771 true chr5: 37904615-37906385 Medicago truncatula
Medtr5g087480 0.5kb upstream 0.5kb upstream 500 false chr5: 37904615-37905114 Medicago truncatula
Medtr5g087480 0.5kb downstream 0.5kb downstream 1771 true chr5: 37905115-37906885 Medicago truncatula
Medtr5g087480 0.5kb downstream 0.5kb downstream 500 false chr5: 37906386-37906885 Medicago truncatula
Medtr5g087480 1.0kb upstream 1.0kb upstream 2271 true chr5: 37904115-37906385 Medicago truncatula
Medtr5g087480 1.0kb upstream 1.0kb upstream 1000 false chr5: 37904115-37905114 Medicago truncatula
Medtr5g087480 1.0kb downstream 1.0kb downstream 2271 true chr5: 37905115-37907385 Medicago truncatula
Medtr5g087480 1.0kb downstream 1.0kb downstream 1000 false chr5: 37906386-37907385 Medicago truncatula
Medtr5g087480 2.0kb upstream 2.0kb upstream 3271 true chr5: 37903115-37906385 Medicago truncatula
Medtr5g087480 2.0kb upstream 2.0kb upstream 2000 false chr5: 37903115-37905114 Medicago truncatula
Medtr5g087480 2.0kb downstream 2.0kb downstream 3271 true chr5: 37905115-37908385 Medicago truncatula
Medtr5g087480 2.0kb downstream 2.0kb downstream 2000 false chr5: 37906386-37908385 Medicago truncatula
Medtr5g087480 5.0kb upstream 5.0kb upstream 6271 true chr5: 37900115-37906385 Medicago truncatula
Medtr5g087480 5.0kb upstream 5.0kb upstream 5000 false chr5: 37900115-37905114 Medicago truncatula
Medtr5g087480 5.0kb downstream 5.0kb downstream 6271 true chr5: 37905115-37911385 Medicago truncatula
Medtr5g087480 5.0kb downstream 5.0kb downstream 5000 false chr5: 37906386-37911385 Medicago truncatula
Medtr5g087480 10.0kb upstream 10.0kb upstream 11271 true chr5: 37895115-37906385 Medicago truncatula
Medtr5g087480 10.0kb upstream 10.0kb upstream 10000 false chr5: 37895115-37905114 Medicago truncatula
Medtr5g087480 10.0kb downstream 10.0kb downstream 11271 true chr5: 37905115-37916385 Medicago truncatula
Medtr5g087480 10.0kb downstream 10.0kb downstream 10000 false chr5: 37906386-37916385 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311193 5265 Fabidae View MSA
124069899 5270 Rosid View MSA
123751884 5271 Pentapetalae View MSA
122795343 5272 Eudicot View MSA
122051065 5273 Angiosperm View MSA
121312276 5274 Embryophyte View MSA
123428296 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.356       Low
cufflinks 3.462        
cufflinks 2.816        
cufflinks 1.513        
cufflinks 3.134        
cufflinks 1.155        
cufflinks 2.008        
cufflinks 3.286        
cufflinks 1.67        

0 Strain