Gene : Medtr5g089170 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR10015//PTHR10015:SF177 - HEAT SHOCK TRANSCRIPTION FACTOR Description:  heat shock transcription factor
Genomic Order:  5063 Name:  ? Medtr5g089170
Secondary Identifier:  ? PAC:31087246
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g089170 0.5kb upstream 0.5kb upstream 2040 true chr5: 38751004-38753043 Medicago truncatula
Medtr5g089170 0.5kb upstream 0.5kb upstream 500 false chr5: 38752544-38753043 Medicago truncatula
Medtr5g089170 0.5kb downstream 0.5kb downstream 2040 true chr5: 38750504-38752543 Medicago truncatula
Medtr5g089170 0.5kb downstream 0.5kb downstream 500 false chr5: 38750504-38751003 Medicago truncatula
Medtr5g089170 1.0kb upstream 1.0kb upstream 2540 true chr5: 38751004-38753543 Medicago truncatula
Medtr5g089170 1.0kb upstream 1.0kb upstream 1000 false chr5: 38752544-38753543 Medicago truncatula
Medtr5g089170 1.0kb downstream 1.0kb downstream 2540 true chr5: 38750004-38752543 Medicago truncatula
Medtr5g089170 1.0kb downstream 1.0kb downstream 1000 false chr5: 38750004-38751003 Medicago truncatula
Medtr5g089170 2.0kb upstream 2.0kb upstream 3540 true chr5: 38751004-38754543 Medicago truncatula
Medtr5g089170 2.0kb upstream 2.0kb upstream 2000 false chr5: 38752544-38754543 Medicago truncatula
Medtr5g089170 2.0kb downstream 2.0kb downstream 3540 true chr5: 38749004-38752543 Medicago truncatula
Medtr5g089170 2.0kb downstream 2.0kb downstream 2000 false chr5: 38749004-38751003 Medicago truncatula
Medtr5g089170 5.0kb upstream 5.0kb upstream 6540 true chr5: 38751004-38757543 Medicago truncatula
Medtr5g089170 5.0kb upstream 5.0kb upstream 5000 false chr5: 38752544-38757543 Medicago truncatula
Medtr5g089170 5.0kb downstream 5.0kb downstream 6540 true chr5: 38746004-38752543 Medicago truncatula
Medtr5g089170 5.0kb downstream 5.0kb downstream 5000 false chr5: 38746004-38751003 Medicago truncatula
Medtr5g089170 10.0kb upstream 10.0kb upstream 11540 true chr5: 38751004-38762543 Medicago truncatula
Medtr5g089170 10.0kb upstream 10.0kb upstream 10000 false chr5: 38752544-38762543 Medicago truncatula
Medtr5g089170 10.0kb downstream 10.0kb downstream 11540 true chr5: 38741004-38752543 Medicago truncatula
Medtr5g089170 10.0kb downstream 10.0kb downstream 10000 false chr5: 38741004-38751003 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297656 5265 Fabidae View MSA
124070016 5270 Rosid View MSA
123749561 5271 Pentapetalae View MSA
122794562 5272 Eudicot View MSA
122050286 5273 Angiosperm View MSA
121349623 5274 Embryophyte View MSA
123428852 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.018     Low  
cufflinks 0.01     Low Low
cufflinks 0.44        
cufflinks 0.027     Low  
cufflinks 1.017       High
cufflinks 1.657       High
cufflinks 0.031     Low  
cufflinks 0.44        

0 Strain