Gene : Medtr5g088220 M. truncatula Mt4.0v1
Defline:  (1 of 3) PTHR24012:SF490 - UBP1-ASSOCIATED PROTEIN 2C Description:  RNA recognition motif, a.k.a. RRM, RBD protein
Genomic Order:  4990 Name:  ? Medtr5g088220
Secondary Identifier:  ? PAC:31090285
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g088220 0.5kb upstream 0.5kb upstream 1994 true chr5: 38251764-38253757 Medicago truncatula
Medtr5g088220 0.5kb upstream 0.5kb upstream 500 false chr5: 38253258-38253757 Medicago truncatula
Medtr5g088220 0.5kb downstream 0.5kb downstream 1994 true chr5: 38251264-38253257 Medicago truncatula
Medtr5g088220 0.5kb downstream 0.5kb downstream 500 false chr5: 38251264-38251763 Medicago truncatula
Medtr5g088220 1.0kb upstream 1.0kb upstream 2494 true chr5: 38251764-38254257 Medicago truncatula
Medtr5g088220 1.0kb upstream 1.0kb upstream 1000 false chr5: 38253258-38254257 Medicago truncatula
Medtr5g088220 1.0kb downstream 1.0kb downstream 2494 true chr5: 38250764-38253257 Medicago truncatula
Medtr5g088220 1.0kb downstream 1.0kb downstream 1000 false chr5: 38250764-38251763 Medicago truncatula
Medtr5g088220 2.0kb upstream 2.0kb upstream 3494 true chr5: 38251764-38255257 Medicago truncatula
Medtr5g088220 2.0kb upstream 2.0kb upstream 2000 false chr5: 38253258-38255257 Medicago truncatula
Medtr5g088220 2.0kb downstream 2.0kb downstream 3494 true chr5: 38249764-38253257 Medicago truncatula
Medtr5g088220 2.0kb downstream 2.0kb downstream 2000 false chr5: 38249764-38251763 Medicago truncatula
Medtr5g088220 5.0kb upstream 5.0kb upstream 6494 true chr5: 38251764-38258257 Medicago truncatula
Medtr5g088220 5.0kb upstream 5.0kb upstream 5000 false chr5: 38253258-38258257 Medicago truncatula
Medtr5g088220 5.0kb downstream 5.0kb downstream 6494 true chr5: 38246764-38253257 Medicago truncatula
Medtr5g088220 5.0kb downstream 5.0kb downstream 5000 false chr5: 38246764-38251763 Medicago truncatula
Medtr5g088220 10.0kb upstream 10.0kb upstream 11494 true chr5: 38251764-38263257 Medicago truncatula
Medtr5g088220 10.0kb upstream 10.0kb upstream 10000 false chr5: 38253258-38263257 Medicago truncatula
Medtr5g088220 10.0kb downstream 10.0kb downstream 11494 true chr5: 38241764-38253257 Medicago truncatula
Medtr5g088220 10.0kb downstream 10.0kb downstream 10000 false chr5: 38241764-38251763 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297165 5265 Fabidae View MSA
124069346 5270 Rosid View MSA
123739331 5271 Pentapetalae View MSA
122793015 5272 Eudicot View MSA
122047267 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121310718 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.282     High Low
cufflinks 38.843     High  
cufflinks 31.293     High  
cufflinks 48.803     High High
cufflinks 40.659     High  
cufflinks 27.484     High  
cufflinks 28.701     High  
cufflinks 36.963     High  
cufflinks 47.492     High High

0 Strain