Gene : Medtr5g089510 M. truncatula Mt4.0v1
Defline:  (1 of 1) KOG2162 - Nonsense-mediated mRNA decay protein Description:  telomerase activating protein Est1
Genomic Order:  5088 Name:  ? Medtr5g089510
Secondary Identifier:  ? PAC:31090863
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g089510 0.5kb upstream 0.5kb upstream 7483 true chr5: 38902124-38909606 Medicago truncatula
Medtr5g089510 0.5kb upstream 0.5kb upstream 500 false chr5: 38902124-38902623 Medicago truncatula
Medtr5g089510 0.5kb downstream 0.5kb downstream 7483 true chr5: 38902624-38910106 Medicago truncatula
Medtr5g089510 0.5kb downstream 0.5kb downstream 500 false chr5: 38909607-38910106 Medicago truncatula
Medtr5g089510 1.0kb upstream 1.0kb upstream 7983 true chr5: 38901624-38909606 Medicago truncatula
Medtr5g089510 1.0kb upstream 1.0kb upstream 1000 false chr5: 38901624-38902623 Medicago truncatula
Medtr5g089510 1.0kb downstream 1.0kb downstream 7983 true chr5: 38902624-38910606 Medicago truncatula
Medtr5g089510 1.0kb downstream 1.0kb downstream 1000 false chr5: 38909607-38910606 Medicago truncatula
Medtr5g089510 2.0kb upstream 2.0kb upstream 8983 true chr5: 38900624-38909606 Medicago truncatula
Medtr5g089510 2.0kb upstream 2.0kb upstream 2000 false chr5: 38900624-38902623 Medicago truncatula
Medtr5g089510 2.0kb downstream 2.0kb downstream 8983 true chr5: 38902624-38911606 Medicago truncatula
Medtr5g089510 2.0kb downstream 2.0kb downstream 2000 false chr5: 38909607-38911606 Medicago truncatula
Medtr5g089510 5.0kb upstream 5.0kb upstream 11983 true chr5: 38897624-38909606 Medicago truncatula
Medtr5g089510 5.0kb upstream 5.0kb upstream 5000 false chr5: 38897624-38902623 Medicago truncatula
Medtr5g089510 5.0kb downstream 5.0kb downstream 11983 true chr5: 38902624-38914606 Medicago truncatula
Medtr5g089510 5.0kb downstream 5.0kb downstream 5000 false chr5: 38909607-38914606 Medicago truncatula
Medtr5g089510 10.0kb upstream 10.0kb upstream 16983 true chr5: 38892624-38909606 Medicago truncatula
Medtr5g089510 10.0kb upstream 10.0kb upstream 10000 false chr5: 38892624-38902623 Medicago truncatula
Medtr5g089510 10.0kb downstream 10.0kb downstream 16983 true chr5: 38902624-38919606 Medicago truncatula
Medtr5g089510 10.0kb downstream 10.0kb downstream 10000 false chr5: 38909607-38919606 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311515 5265 Fabidae View MSA
124074641 5270 Rosid View MSA
123750882 5271 Pentapetalae View MSA
122793069 5272 Eudicot View MSA
122041626 5273 Angiosperm View MSA
121347724 5274 Embryophyte View MSA
123426231 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.719       High
cufflinks 5.912        
cufflinks 9.978     High High
cufflinks 4.324       Low
cufflinks 6.711        
cufflinks 5.485        
cufflinks 9.231       High
cufflinks 7.161        
cufflinks 5.855        

0 Strain