Gene : Medtr5g092720 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR13312 - HIV-INDUCED PROTEIN-7-LIKE PROTEASE Description:  OTU-like cysteine protease
Genomic Order:  5331 Name:  ? Medtr5g092720
Secondary Identifier:  ? PAC:31085002
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g092720 0.5kb upstream 0.5kb upstream 4758 true chr5: 40496811-40501568 Medicago truncatula
Medtr5g092720 0.5kb upstream 0.5kb upstream 500 false chr5: 40501069-40501568 Medicago truncatula
Medtr5g092720 0.5kb downstream 0.5kb downstream 4758 true chr5: 40496311-40501068 Medicago truncatula
Medtr5g092720 0.5kb downstream 0.5kb downstream 500 false chr5: 40496311-40496810 Medicago truncatula
Medtr5g092720 1.0kb upstream 1.0kb upstream 5258 true chr5: 40496811-40502068 Medicago truncatula
Medtr5g092720 1.0kb upstream 1.0kb upstream 1000 false chr5: 40501069-40502068 Medicago truncatula
Medtr5g092720 1.0kb downstream 1.0kb downstream 5258 true chr5: 40495811-40501068 Medicago truncatula
Medtr5g092720 1.0kb downstream 1.0kb downstream 1000 false chr5: 40495811-40496810 Medicago truncatula
Medtr5g092720 2.0kb upstream 2.0kb upstream 6258 true chr5: 40496811-40503068 Medicago truncatula
Medtr5g092720 2.0kb upstream 2.0kb upstream 2000 false chr5: 40501069-40503068 Medicago truncatula
Medtr5g092720 2.0kb downstream 2.0kb downstream 6258 true chr5: 40494811-40501068 Medicago truncatula
Medtr5g092720 2.0kb downstream 2.0kb downstream 2000 false chr5: 40494811-40496810 Medicago truncatula
Medtr5g092720 5.0kb upstream 5.0kb upstream 9258 true chr5: 40496811-40506068 Medicago truncatula
Medtr5g092720 5.0kb upstream 5.0kb upstream 5000 false chr5: 40501069-40506068 Medicago truncatula
Medtr5g092720 5.0kb downstream 5.0kb downstream 9258 true chr5: 40491811-40501068 Medicago truncatula
Medtr5g092720 5.0kb downstream 5.0kb downstream 5000 false chr5: 40491811-40496810 Medicago truncatula
Medtr5g092720 10.0kb upstream 10.0kb upstream 14258 true chr5: 40496811-40511068 Medicago truncatula
Medtr5g092720 10.0kb upstream 10.0kb upstream 10000 false chr5: 40501069-40511068 Medicago truncatula
Medtr5g092720 10.0kb downstream 10.0kb downstream 14258 true chr5: 40486811-40501068 Medicago truncatula
Medtr5g092720 10.0kb downstream 10.0kb downstream 10000 false chr5: 40486811-40496810 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300649 5265 Fabidae View MSA
124061628 5270 Rosid View MSA
123738549 5271 Pentapetalae View MSA
122788500 5272 Eudicot View MSA
122046032 5273 Angiosperm View MSA
121345268 5274 Embryophyte View MSA
123424822 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.46        
cufflinks 1.744        
cufflinks 1.811        
cufflinks 2.649       High
cufflinks 2.095        
cufflinks 1.187       Low
cufflinks 3.012       High
cufflinks 1.523        
cufflinks 2.124        

0 Strain