Gene : Medtr5g091920 M. truncatula Mt4.0v1
Defline:  (1 of 5) 2.1.1.229 - tRNA (carboxymethyluridine(34)-5-O)-methyltransferase / tRNA methyltransferase 9 Description:  2OG-Fe(II) oxygenase family oxidoreductase
Genomic Order:  5271 Name:  ? Medtr5g091920
Secondary Identifier:  ? PAC:31087912
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6829 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g091920 0.5kb upstream 0.5kb upstream 1501 true chr5: 40116152-40117652 Medicago truncatula
Medtr5g091920 0.5kb upstream 0.5kb upstream 500 false chr5: 40117153-40117652 Medicago truncatula
Medtr5g091920 0.5kb downstream 0.5kb downstream 1501 true chr5: 40115652-40117152 Medicago truncatula
Medtr5g091920 0.5kb downstream 0.5kb downstream 500 false chr5: 40115652-40116151 Medicago truncatula
Medtr5g091920 1.0kb upstream 1.0kb upstream 2001 true chr5: 40116152-40118152 Medicago truncatula
Medtr5g091920 1.0kb upstream 1.0kb upstream 1000 false chr5: 40117153-40118152 Medicago truncatula
Medtr5g091920 1.0kb downstream 1.0kb downstream 2001 true chr5: 40115152-40117152 Medicago truncatula
Medtr5g091920 1.0kb downstream 1.0kb downstream 1000 false chr5: 40115152-40116151 Medicago truncatula
Medtr5g091920 2.0kb upstream 2.0kb upstream 3001 true chr5: 40116152-40119152 Medicago truncatula
Medtr5g091920 2.0kb upstream 2.0kb upstream 2000 false chr5: 40117153-40119152 Medicago truncatula
Medtr5g091920 2.0kb downstream 2.0kb downstream 3001 true chr5: 40114152-40117152 Medicago truncatula
Medtr5g091920 2.0kb downstream 2.0kb downstream 2000 false chr5: 40114152-40116151 Medicago truncatula
Medtr5g091920 5.0kb upstream 5.0kb upstream 6001 true chr5: 40116152-40122152 Medicago truncatula
Medtr5g091920 5.0kb upstream 5.0kb upstream 5000 false chr5: 40117153-40122152 Medicago truncatula
Medtr5g091920 5.0kb downstream 5.0kb downstream 6001 true chr5: 40111152-40117152 Medicago truncatula
Medtr5g091920 5.0kb downstream 5.0kb downstream 5000 false chr5: 40111152-40116151 Medicago truncatula
Medtr5g091920 10.0kb upstream 10.0kb upstream 11001 true chr5: 40116152-40127152 Medicago truncatula
Medtr5g091920 10.0kb upstream 10.0kb upstream 10000 false chr5: 40117153-40127152 Medicago truncatula
Medtr5g091920 10.0kb downstream 10.0kb downstream 11001 true chr5: 40106152-40117152 Medicago truncatula
Medtr5g091920 10.0kb downstream 10.0kb downstream 10000 false chr5: 40106152-40116151 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308077 5265 Fabidae View MSA
124068599 5270 Rosid View MSA
123740892 5271 Pentapetalae View MSA
122793671 5272 Eudicot View MSA
122046991 5273 Angiosperm View MSA
121347521 5274 Embryophyte View MSA
123425237 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.301       Low
cufflinks 4.563        
cufflinks 5.499        
cufflinks 7.87       High
cufflinks 5.848        
cufflinks 4.57        
cufflinks 6.089        
cufflinks 4.585        
cufflinks 6.812       High

0 Strain