Gene : Medtr5g079920 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11134:SF1 - RUBY, ISOFORM B Description:  affected trafficking protein
Genomic Order:  4408 Name:  ? Medtr5g079920
Secondary Identifier:  ? PAC:31088559
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g079920 0.5kb upstream 0.5kb upstream 11120 true chr5: 34185426-34196545 Medicago truncatula
Medtr5g079920 0.5kb upstream 0.5kb upstream 500 false chr5: 34196046-34196545 Medicago truncatula
Medtr5g079920 0.5kb downstream 0.5kb downstream 11120 true chr5: 34184926-34196045 Medicago truncatula
Medtr5g079920 0.5kb downstream 0.5kb downstream 500 false chr5: 34184926-34185425 Medicago truncatula
Medtr5g079920 1.0kb upstream 1.0kb upstream 11620 true chr5: 34185426-34197045 Medicago truncatula
Medtr5g079920 1.0kb upstream 1.0kb upstream 1000 false chr5: 34196046-34197045 Medicago truncatula
Medtr5g079920 1.0kb downstream 1.0kb downstream 11620 true chr5: 34184426-34196045 Medicago truncatula
Medtr5g079920 1.0kb downstream 1.0kb downstream 1000 false chr5: 34184426-34185425 Medicago truncatula
Medtr5g079920 2.0kb upstream 2.0kb upstream 12620 true chr5: 34185426-34198045 Medicago truncatula
Medtr5g079920 2.0kb upstream 2.0kb upstream 2000 false chr5: 34196046-34198045 Medicago truncatula
Medtr5g079920 2.0kb downstream 2.0kb downstream 12620 true chr5: 34183426-34196045 Medicago truncatula
Medtr5g079920 2.0kb downstream 2.0kb downstream 2000 false chr5: 34183426-34185425 Medicago truncatula
Medtr5g079920 5.0kb upstream 5.0kb upstream 15620 true chr5: 34185426-34201045 Medicago truncatula
Medtr5g079920 5.0kb upstream 5.0kb upstream 5000 false chr5: 34196046-34201045 Medicago truncatula
Medtr5g079920 5.0kb downstream 5.0kb downstream 15620 true chr5: 34180426-34196045 Medicago truncatula
Medtr5g079920 5.0kb downstream 5.0kb downstream 5000 false chr5: 34180426-34185425 Medicago truncatula
Medtr5g079920 10.0kb upstream 10.0kb upstream 20620 true chr5: 34185426-34206045 Medicago truncatula
Medtr5g079920 10.0kb upstream 10.0kb upstream 10000 false chr5: 34196046-34206045 Medicago truncatula
Medtr5g079920 10.0kb downstream 10.0kb downstream 20620 true chr5: 34175426-34196045 Medicago truncatula
Medtr5g079920 10.0kb downstream 10.0kb downstream 10000 false chr5: 34175426-34185425 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302097 5265 Fabidae View MSA
124063953 5270 Rosid View MSA
123736647 5271 Pentapetalae View MSA
122788279 5272 Eudicot View MSA
122042560 5273 Angiosperm View MSA
121346177 5274 Embryophyte View MSA
123425286 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.529        
cufflinks 2.54        
cufflinks 2.755        
cufflinks 0.793       Low
cufflinks 2.937       High
cufflinks 0.409       Low
cufflinks 1.538        
cufflinks 2.046        
cufflinks 1.452        

0 Strain