Gene : Medtr5g067060 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR11680:SF12 - SERINE HYDROXYMETHYLTRANSFERASE 2, MITOCHONDRIAL Description:  serine transhydroxymethyltransferase
Genomic Order:  3607 Name:  ? Medtr5g067060
Secondary Identifier:  ? PAC:31086647
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4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula GLYSYN-PWY Medicago truncatula pathologic  
Mtruncatula PWY-2161 Medicago truncatula pathologic  
Mtruncatula PWY-3841 Medicago truncatula pathologic  
Mtruncatula SER-GLYSYN-PWY Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g067060 0.5kb upstream 0.5kb upstream 9338 true chr5: 28320557-28329894 Medicago truncatula
Medtr5g067060 0.5kb upstream 0.5kb upstream 500 false chr5: 28320557-28321056 Medicago truncatula
Medtr5g067060 0.5kb downstream 0.5kb downstream 9338 true chr5: 28321057-28330394 Medicago truncatula
Medtr5g067060 0.5kb downstream 0.5kb downstream 500 false chr5: 28329895-28330394 Medicago truncatula
Medtr5g067060 1.0kb upstream 1.0kb upstream 9838 true chr5: 28320057-28329894 Medicago truncatula
Medtr5g067060 1.0kb upstream 1.0kb upstream 1000 false chr5: 28320057-28321056 Medicago truncatula
Medtr5g067060 1.0kb downstream 1.0kb downstream 9838 true chr5: 28321057-28330894 Medicago truncatula
Medtr5g067060 1.0kb downstream 1.0kb downstream 1000 false chr5: 28329895-28330894 Medicago truncatula
Medtr5g067060 2.0kb upstream 2.0kb upstream 10838 true chr5: 28319057-28329894 Medicago truncatula
Medtr5g067060 2.0kb upstream 2.0kb upstream 2000 false chr5: 28319057-28321056 Medicago truncatula
Medtr5g067060 2.0kb downstream 2.0kb downstream 10838 true chr5: 28321057-28331894 Medicago truncatula
Medtr5g067060 2.0kb downstream 2.0kb downstream 2000 false chr5: 28329895-28331894 Medicago truncatula
Medtr5g067060 5.0kb upstream 5.0kb upstream 13838 true chr5: 28316057-28329894 Medicago truncatula
Medtr5g067060 5.0kb upstream 5.0kb upstream 5000 false chr5: 28316057-28321056 Medicago truncatula
Medtr5g067060 5.0kb downstream 5.0kb downstream 13838 true chr5: 28321057-28334894 Medicago truncatula
Medtr5g067060 5.0kb downstream 5.0kb downstream 5000 false chr5: 28329895-28334894 Medicago truncatula
Medtr5g067060 10.0kb upstream 10.0kb upstream 18838 true chr5: 28311057-28329894 Medicago truncatula
Medtr5g067060 10.0kb upstream 10.0kb upstream 10000 false chr5: 28311057-28321056 Medicago truncatula
Medtr5g067060 10.0kb downstream 10.0kb downstream 18838 true chr5: 28321057-28339894 Medicago truncatula
Medtr5g067060 10.0kb downstream 10.0kb downstream 10000 false chr5: 28329895-28339894 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314119 5265 Fabidae View MSA
124064979 5270 Rosid View MSA
123747223 5271 Pentapetalae View MSA
122789073 5272 Eudicot View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.735        
cufflinks 2.494        
cufflinks 0.758       Low
cufflinks 3.331        
cufflinks 2.996        
cufflinks 1.348        
cufflinks 5.393        
cufflinks 1.055       Low
cufflinks 8.572       High

0 Strain