Gene : Medtr5g066700 M. truncatula Mt4.0v1
Defline:  (1 of 10) PTHR14155:SF110 - RING/U-BOX DOMAIN-CONTAINING PROTEIN Description:  zinc finger, C3HC4 type (RING finger) protein
Genomic Order:  3578 Name:  ? Medtr5g066700
Secondary Identifier:  ? PAC:31085495
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-7511 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g066700 0.5kb upstream 0.5kb upstream 914 true chr5: 28152635-28153548 Medicago truncatula
Medtr5g066700 0.5kb upstream 0.5kb upstream 500 false chr5: 28152635-28153134 Medicago truncatula
Medtr5g066700 0.5kb downstream 0.5kb downstream 914 true chr5: 28153135-28154048 Medicago truncatula
Medtr5g066700 0.5kb downstream 0.5kb downstream 500 false chr5: 28153549-28154048 Medicago truncatula
Medtr5g066700 1.0kb upstream 1.0kb upstream 1414 true chr5: 28152135-28153548 Medicago truncatula
Medtr5g066700 1.0kb upstream 1.0kb upstream 1000 false chr5: 28152135-28153134 Medicago truncatula
Medtr5g066700 1.0kb downstream 1.0kb downstream 1414 true chr5: 28153135-28154548 Medicago truncatula
Medtr5g066700 1.0kb downstream 1.0kb downstream 1000 false chr5: 28153549-28154548 Medicago truncatula
Medtr5g066700 2.0kb upstream 2.0kb upstream 2414 true chr5: 28151135-28153548 Medicago truncatula
Medtr5g066700 2.0kb upstream 2.0kb upstream 2000 false chr5: 28151135-28153134 Medicago truncatula
Medtr5g066700 2.0kb downstream 2.0kb downstream 2414 true chr5: 28153135-28155548 Medicago truncatula
Medtr5g066700 2.0kb downstream 2.0kb downstream 2000 false chr5: 28153549-28155548 Medicago truncatula
Medtr5g066700 5.0kb upstream 5.0kb upstream 5414 true chr5: 28148135-28153548 Medicago truncatula
Medtr5g066700 5.0kb upstream 5.0kb upstream 5000 false chr5: 28148135-28153134 Medicago truncatula
Medtr5g066700 5.0kb downstream 5.0kb downstream 5414 true chr5: 28153135-28158548 Medicago truncatula
Medtr5g066700 5.0kb downstream 5.0kb downstream 5000 false chr5: 28153549-28158548 Medicago truncatula
Medtr5g066700 10.0kb upstream 10.0kb upstream 10414 true chr5: 28143135-28153548 Medicago truncatula
Medtr5g066700 10.0kb upstream 10.0kb upstream 10000 false chr5: 28143135-28153134 Medicago truncatula
Medtr5g066700 10.0kb downstream 10.0kb downstream 10414 true chr5: 28153135-28163548 Medicago truncatula
Medtr5g066700 10.0kb downstream 10.0kb downstream 10000 false chr5: 28153549-28163548 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311988 5265 Fabidae View MSA
124069970 5270 Rosid View MSA
123750154 5271 Pentapetalae View MSA
122792700 5272 Eudicot View MSA
122051603 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.032     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.233        

0 Strain