Gene : Medtr6g017205 M. truncatula Mt4.0v1
Defline:  (1 of 32) 1.3.3.8 - Tetrahydroberberine oxidase / THB oxidase Description:  FAD-binding berberine family protein
Genomic Order:  902 Name:  ? Medtr6g017205
Secondary Identifier:  ? PAC:31102506
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g017205 0.5kb upstream 0.5kb upstream 2126 true chr6: 6837664-6839789 Medicago truncatula
Medtr6g017205 0.5kb upstream 0.5kb upstream 500 false chr6: 6837664-6838163 Medicago truncatula
Medtr6g017205 0.5kb downstream 0.5kb downstream 2126 true chr6: 6838164-6840289 Medicago truncatula
Medtr6g017205 0.5kb downstream 0.5kb downstream 500 false chr6: 6839790-6840289 Medicago truncatula
Medtr6g017205 1.0kb upstream 1.0kb upstream 2626 true chr6: 6837164-6839789 Medicago truncatula
Medtr6g017205 1.0kb upstream 1.0kb upstream 1000 false chr6: 6837164-6838163 Medicago truncatula
Medtr6g017205 1.0kb downstream 1.0kb downstream 2626 true chr6: 6838164-6840789 Medicago truncatula
Medtr6g017205 1.0kb downstream 1.0kb downstream 1000 false chr6: 6839790-6840789 Medicago truncatula
Medtr6g017205 2.0kb upstream 2.0kb upstream 3626 true chr6: 6836164-6839789 Medicago truncatula
Medtr6g017205 2.0kb upstream 2.0kb upstream 2000 false chr6: 6836164-6838163 Medicago truncatula
Medtr6g017205 2.0kb downstream 2.0kb downstream 3626 true chr6: 6838164-6841789 Medicago truncatula
Medtr6g017205 2.0kb downstream 2.0kb downstream 2000 false chr6: 6839790-6841789 Medicago truncatula
Medtr6g017205 5.0kb upstream 5.0kb upstream 6626 true chr6: 6833164-6839789 Medicago truncatula
Medtr6g017205 5.0kb upstream 5.0kb upstream 5000 false chr6: 6833164-6838163 Medicago truncatula
Medtr6g017205 5.0kb downstream 5.0kb downstream 6626 true chr6: 6838164-6844789 Medicago truncatula
Medtr6g017205 5.0kb downstream 5.0kb downstream 5000 false chr6: 6839790-6844789 Medicago truncatula
Medtr6g017205 10.0kb upstream 10.0kb upstream 11626 true chr6: 6828164-6839789 Medicago truncatula
Medtr6g017205 10.0kb upstream 10.0kb upstream 10000 false chr6: 6828164-6838163 Medicago truncatula
Medtr6g017205 10.0kb downstream 10.0kb downstream 11626 true chr6: 6838164-6849789 Medicago truncatula
Medtr6g017205 10.0kb downstream 10.0kb downstream 10000 false chr6: 6839790-6849789 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312484 5265 Fabidae View MSA
124073888 5270 Rosid View MSA
123750008 5271 Pentapetalae View MSA
122797707 5272 Eudicot View MSA
122049918 5273 Angiosperm View MSA
121351151 5274 Embryophyte View MSA
123426970 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.043     Low Low
cufflinks 0.206        
cufflinks 0.061     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.268       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.15        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain