Gene : Medtr6g029200 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR10003:SF31 - SUPEROXIDE DISMUTASE [CU-ZN] 3 Description:  superoxide dismutase [Cu-Zn] protein
Genomic Order:  1301 Name:  ? Medtr6g029200
Secondary Identifier:  ? PAC:31101570
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula DETOX1-PWY Medicago truncatula pathologic  
Mtruncatula DETOX1-PWY-1 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g029200 0.5kb upstream 0.5kb upstream 4650 true chr6: 10035158-10039807 Medicago truncatula
Medtr6g029200 0.5kb upstream 0.5kb upstream 500 false chr6: 10035158-10035657 Medicago truncatula
Medtr6g029200 0.5kb downstream 0.5kb downstream 4650 true chr6: 10035658-10040307 Medicago truncatula
Medtr6g029200 0.5kb downstream 0.5kb downstream 500 false chr6: 10039808-10040307 Medicago truncatula
Medtr6g029200 1.0kb upstream 1.0kb upstream 5150 true chr6: 10034658-10039807 Medicago truncatula
Medtr6g029200 1.0kb upstream 1.0kb upstream 1000 false chr6: 10034658-10035657 Medicago truncatula
Medtr6g029200 1.0kb downstream 1.0kb downstream 5150 true chr6: 10035658-10040807 Medicago truncatula
Medtr6g029200 1.0kb downstream 1.0kb downstream 1000 false chr6: 10039808-10040807 Medicago truncatula
Medtr6g029200 2.0kb upstream 2.0kb upstream 6150 true chr6: 10033658-10039807 Medicago truncatula
Medtr6g029200 2.0kb upstream 2.0kb upstream 2000 false chr6: 10033658-10035657 Medicago truncatula
Medtr6g029200 2.0kb downstream 2.0kb downstream 6150 true chr6: 10035658-10041807 Medicago truncatula
Medtr6g029200 2.0kb downstream 2.0kb downstream 2000 false chr6: 10039808-10041807 Medicago truncatula
Medtr6g029200 5.0kb upstream 5.0kb upstream 9150 true chr6: 10030658-10039807 Medicago truncatula
Medtr6g029200 5.0kb upstream 5.0kb upstream 5000 false chr6: 10030658-10035657 Medicago truncatula
Medtr6g029200 5.0kb downstream 5.0kb downstream 9150 true chr6: 10035658-10044807 Medicago truncatula
Medtr6g029200 5.0kb downstream 5.0kb downstream 5000 false chr6: 10039808-10044807 Medicago truncatula
Medtr6g029200 10.0kb upstream 10.0kb upstream 14150 true chr6: 10025658-10039807 Medicago truncatula
Medtr6g029200 10.0kb upstream 10.0kb upstream 10000 false chr6: 10025658-10035657 Medicago truncatula
Medtr6g029200 10.0kb downstream 10.0kb downstream 14150 true chr6: 10035658-10049807 Medicago truncatula
Medtr6g029200 10.0kb downstream 10.0kb downstream 10000 false chr6: 10039808-10049807 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302817 5265 Fabidae View MSA
124071759 5270 Rosid View MSA
123743890 5271 Pentapetalae View MSA
122797763 5272 Eudicot View MSA
122047736 5273 Angiosperm View MSA
121347419 5274 Embryophyte View MSA
123427939 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.32        
cufflinks 1.996        
cufflinks 1.558        
cufflinks 2.259        
cufflinks 1.498        
cufflinks 3.806       High
cufflinks 1.239       Low
cufflinks 2.189        
cufflinks 1.285       Low

0 Strain