Gene : Medtr6g008480 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR10201//PTHR10201:SF152 - MATRIX METALLOPROTEINASE Description:  matrix metalloproteinase
Genomic Order:  303 Name:  ? Medtr6g008480
Secondary Identifier:  ? PAC:31101684
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g008480 0.5kb upstream 0.5kb upstream 2747 true chr6: 2282192-2284938 Medicago truncatula
Medtr6g008480 0.5kb upstream 0.5kb upstream 500 false chr6: 2284439-2284938 Medicago truncatula
Medtr6g008480 0.5kb downstream 0.5kb downstream 2747 true chr6: 2281692-2284438 Medicago truncatula
Medtr6g008480 0.5kb downstream 0.5kb downstream 500 false chr6: 2281692-2282191 Medicago truncatula
Medtr6g008480 1.0kb upstream 1.0kb upstream 3247 true chr6: 2282192-2285438 Medicago truncatula
Medtr6g008480 1.0kb upstream 1.0kb upstream 1000 false chr6: 2284439-2285438 Medicago truncatula
Medtr6g008480 1.0kb downstream 1.0kb downstream 3247 true chr6: 2281192-2284438 Medicago truncatula
Medtr6g008480 1.0kb downstream 1.0kb downstream 1000 false chr6: 2281192-2282191 Medicago truncatula
Medtr6g008480 2.0kb upstream 2.0kb upstream 4247 true chr6: 2282192-2286438 Medicago truncatula
Medtr6g008480 2.0kb upstream 2.0kb upstream 2000 false chr6: 2284439-2286438 Medicago truncatula
Medtr6g008480 2.0kb downstream 2.0kb downstream 4247 true chr6: 2280192-2284438 Medicago truncatula
Medtr6g008480 2.0kb downstream 2.0kb downstream 2000 false chr6: 2280192-2282191 Medicago truncatula
Medtr6g008480 5.0kb upstream 5.0kb upstream 7247 true chr6: 2282192-2289438 Medicago truncatula
Medtr6g008480 5.0kb upstream 5.0kb upstream 5000 false chr6: 2284439-2289438 Medicago truncatula
Medtr6g008480 5.0kb downstream 5.0kb downstream 7247 true chr6: 2277192-2284438 Medicago truncatula
Medtr6g008480 5.0kb downstream 5.0kb downstream 5000 false chr6: 2277192-2282191 Medicago truncatula
Medtr6g008480 10.0kb upstream 10.0kb upstream 12247 true chr6: 2282192-2294438 Medicago truncatula
Medtr6g008480 10.0kb upstream 10.0kb upstream 10000 false chr6: 2284439-2294438 Medicago truncatula
Medtr6g008480 10.0kb downstream 10.0kb downstream 12247 true chr6: 2272192-2284438 Medicago truncatula
Medtr6g008480 10.0kb downstream 10.0kb downstream 10000 false chr6: 2272192-2282191 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026255 5273 Angiosperm View MSA
122309410 5265 Fabidae View MSA
124073759 5270 Rosid View MSA
123750653 5271 Pentapetalae View MSA
122795756 5272 Eudicot View MSA
121350353 5274 Embryophyte View MSA
123381692 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.279        
cufflinks 0.179        
cufflinks 0.054     Low Low
cufflinks 6.827       High
cufflinks 0.304        
cufflinks 0.49        
cufflinks 1.963        
cufflinks 0.314        
cufflinks 2.865       High

0 Strain