Gene : Medtr6g005000 M. truncatula Mt4.0v1
Defline:  (1 of 47) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Description:  PPR containing plant-like protein
Genomic Order:  81 Name:  ? Medtr6g005000
Secondary Identifier:  ? PAC:31101698
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g005000 0.5kb upstream 0.5kb upstream 2438 true chr6: 554990-557427 Medicago truncatula
Medtr6g005000 0.5kb upstream 0.5kb upstream 500 false chr6: 556928-557427 Medicago truncatula
Medtr6g005000 0.5kb downstream 0.5kb downstream 2438 true chr6: 554490-556927 Medicago truncatula
Medtr6g005000 0.5kb downstream 0.5kb downstream 500 false chr6: 554490-554989 Medicago truncatula
Medtr6g005000 1.0kb upstream 1.0kb upstream 2938 true chr6: 554990-557927 Medicago truncatula
Medtr6g005000 1.0kb upstream 1.0kb upstream 1000 false chr6: 556928-557927 Medicago truncatula
Medtr6g005000 1.0kb downstream 1.0kb downstream 2938 true chr6: 553990-556927 Medicago truncatula
Medtr6g005000 1.0kb downstream 1.0kb downstream 1000 false chr6: 553990-554989 Medicago truncatula
Medtr6g005000 2.0kb upstream 2.0kb upstream 3938 true chr6: 554990-558927 Medicago truncatula
Medtr6g005000 2.0kb upstream 2.0kb upstream 2000 false chr6: 556928-558927 Medicago truncatula
Medtr6g005000 2.0kb downstream 2.0kb downstream 3938 true chr6: 552990-556927 Medicago truncatula
Medtr6g005000 2.0kb downstream 2.0kb downstream 2000 false chr6: 552990-554989 Medicago truncatula
Medtr6g005000 5.0kb upstream 5.0kb upstream 6938 true chr6: 554990-561927 Medicago truncatula
Medtr6g005000 5.0kb upstream 5.0kb upstream 5000 false chr6: 556928-561927 Medicago truncatula
Medtr6g005000 5.0kb downstream 5.0kb downstream 6938 true chr6: 549990-556927 Medicago truncatula
Medtr6g005000 5.0kb downstream 5.0kb downstream 5000 false chr6: 549990-554989 Medicago truncatula
Medtr6g005000 10.0kb upstream 10.0kb upstream 11938 true chr6: 554990-566927 Medicago truncatula
Medtr6g005000 10.0kb upstream 10.0kb upstream 10000 false chr6: 556928-566927 Medicago truncatula
Medtr6g005000 10.0kb downstream 10.0kb downstream 11938 true chr6: 544990-556927 Medicago truncatula
Medtr6g005000 10.0kb downstream 10.0kb downstream 10000 false chr6: 544990-554989 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306111 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.204        
cufflinks 0.653        
cufflinks 0.802        
cufflinks 0.086       Low
cufflinks 0.94       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.309        
cufflinks 0.506        
cufflinks 0.297        

0 Strain