Gene : Medtr5g095470 M. truncatula Mt4.0v1
Defline:  (1 of 2) PTHR23416:SF56 - SERINE ACETYLTRANSFERASE 1, CHLOROPLASTIC-RELATED Description:  serine acetyltransferase
Genomic Order:  5543 Name:  ? Medtr5g095470
Secondary Identifier:  ? PAC:31088003
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2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula CYSTSYN-PWY Medicago truncatula pathologic  
Mtruncatula PWY-6936 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g095470 0.5kb upstream 0.5kb upstream 1466 true chr5: 41729019-41730484 Medicago truncatula
Medtr5g095470 0.5kb upstream 0.5kb upstream 500 false chr5: 41729985-41730484 Medicago truncatula
Medtr5g095470 0.5kb downstream 0.5kb downstream 1466 true chr5: 41728519-41729984 Medicago truncatula
Medtr5g095470 0.5kb downstream 0.5kb downstream 500 false chr5: 41728519-41729018 Medicago truncatula
Medtr5g095470 1.0kb upstream 1.0kb upstream 1966 true chr5: 41729019-41730984 Medicago truncatula
Medtr5g095470 1.0kb upstream 1.0kb upstream 1000 false chr5: 41729985-41730984 Medicago truncatula
Medtr5g095470 1.0kb downstream 1.0kb downstream 1966 true chr5: 41728019-41729984 Medicago truncatula
Medtr5g095470 1.0kb downstream 1.0kb downstream 1000 false chr5: 41728019-41729018 Medicago truncatula
Medtr5g095470 2.0kb upstream 2.0kb upstream 2966 true chr5: 41729019-41731984 Medicago truncatula
Medtr5g095470 2.0kb upstream 2.0kb upstream 2000 false chr5: 41729985-41731984 Medicago truncatula
Medtr5g095470 2.0kb downstream 2.0kb downstream 2966 true chr5: 41727019-41729984 Medicago truncatula
Medtr5g095470 2.0kb downstream 2.0kb downstream 2000 false chr5: 41727019-41729018 Medicago truncatula
Medtr5g095470 5.0kb upstream 5.0kb upstream 5966 true chr5: 41729019-41734984 Medicago truncatula
Medtr5g095470 5.0kb upstream 5.0kb upstream 5000 false chr5: 41729985-41734984 Medicago truncatula
Medtr5g095470 5.0kb downstream 5.0kb downstream 5966 true chr5: 41724019-41729984 Medicago truncatula
Medtr5g095470 5.0kb downstream 5.0kb downstream 5000 false chr5: 41724019-41729018 Medicago truncatula
Medtr5g095470 10.0kb upstream 10.0kb upstream 10966 true chr5: 41729019-41739984 Medicago truncatula
Medtr5g095470 10.0kb upstream 10.0kb upstream 10000 false chr5: 41729985-41739984 Medicago truncatula
Medtr5g095470 10.0kb downstream 10.0kb downstream 10966 true chr5: 41719019-41729984 Medicago truncatula
Medtr5g095470 10.0kb downstream 10.0kb downstream 10000 false chr5: 41719019-41729018 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122297124 5265 Fabidae View MSA
124069334 5270 Rosid View MSA
123751427 5271 Pentapetalae View MSA
122788280 5272 Eudicot View MSA
122045055 5273 Angiosperm View MSA
121348374 5274 Embryophyte View MSA
123426625 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 82.651     High High
cufflinks 6.73        
cufflinks 8.577        
cufflinks 14.724     High  
cufflinks 9.248        
cufflinks 16.876     High  
cufflinks 34.588     High  
cufflinks 5.419       Low
cufflinks 19.881     High  

0 Strain