Gene : Medtr5g099070 M. truncatula Mt4.0v1
Defline:  (1 of 1) PF02460//PF16414 - Patched family (Patched) // Niemann-Pick C1 N terminus (NPC1_N) Description:  niemann-pick C1-like protein
Genomic Order:  5811 Name:  ? Medtr5g099070
Secondary Identifier:  ? PAC:31086903
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g099070 0.5kb upstream 0.5kb upstream 21306 true chr5: 43416142-43437447 Medicago truncatula
Medtr5g099070 0.5kb upstream 0.5kb upstream 500 false chr5: 43436948-43437447 Medicago truncatula
Medtr5g099070 0.5kb downstream 0.5kb downstream 21306 true chr5: 43415642-43436947 Medicago truncatula
Medtr5g099070 0.5kb downstream 0.5kb downstream 500 false chr5: 43415642-43416141 Medicago truncatula
Medtr5g099070 1.0kb upstream 1.0kb upstream 21806 true chr5: 43416142-43437947 Medicago truncatula
Medtr5g099070 1.0kb upstream 1.0kb upstream 1000 false chr5: 43436948-43437947 Medicago truncatula
Medtr5g099070 1.0kb downstream 1.0kb downstream 21806 true chr5: 43415142-43436947 Medicago truncatula
Medtr5g099070 1.0kb downstream 1.0kb downstream 1000 false chr5: 43415142-43416141 Medicago truncatula
Medtr5g099070 2.0kb upstream 2.0kb upstream 22806 true chr5: 43416142-43438947 Medicago truncatula
Medtr5g099070 2.0kb upstream 2.0kb upstream 2000 false chr5: 43436948-43438947 Medicago truncatula
Medtr5g099070 2.0kb downstream 2.0kb downstream 22806 true chr5: 43414142-43436947 Medicago truncatula
Medtr5g099070 2.0kb downstream 2.0kb downstream 2000 false chr5: 43414142-43416141 Medicago truncatula
Medtr5g099070 5.0kb upstream 5.0kb upstream 25806 true chr5: 43416142-43441947 Medicago truncatula
Medtr5g099070 5.0kb upstream 5.0kb upstream 5000 false chr5: 43436948-43441947 Medicago truncatula
Medtr5g099070 5.0kb downstream 5.0kb downstream 25806 true chr5: 43411142-43436947 Medicago truncatula
Medtr5g099070 5.0kb downstream 5.0kb downstream 5000 false chr5: 43411142-43416141 Medicago truncatula
Medtr5g099070 10.0kb upstream 10.0kb upstream 30806 true chr5: 43416142-43446947 Medicago truncatula
Medtr5g099070 10.0kb upstream 10.0kb upstream 10000 false chr5: 43436948-43446947 Medicago truncatula
Medtr5g099070 10.0kb downstream 10.0kb downstream 30806 true chr5: 43406142-43436947 Medicago truncatula
Medtr5g099070 10.0kb downstream 10.0kb downstream 10000 false chr5: 43406142-43416141 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312597 5265 Fabidae View MSA
124071580 5270 Rosid View MSA
123738357 5271 Pentapetalae View MSA
122785760 5272 Eudicot View MSA
122045765 5273 Angiosperm View MSA
123429105 5275 Viridiplantae View MSA
121349896 5274 Embryophyte View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.69        
cufflinks 1.836        
cufflinks 1.819        
cufflinks 0.485       Low
cufflinks 2.511       High
cufflinks 0.327       Low
cufflinks 1.337        
cufflinks 1.511        
cufflinks 1.435        

0 Strain