Gene : Medtr5g098800 M. truncatula Mt4.0v1
Defline:  (1 of 1) 1.3.3.3 - Coproporphyrinogen oxidase / Coproporphyrinogenase Description:  coproporphyrinogen III oxidase
Genomic Order:  5790 Name:  ? Medtr5g098800
Secondary Identifier:  ? PAC:31091634
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3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula CHLOROPHYLL-SYN Medicago truncatula pathologic  
Mtruncatula HEME-BIOSYNTHESIS-II Medicago truncatula pathologic  
Mtruncatula PWY-5918 Medicago truncatula pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr5g098800 0.5kb upstream 0.5kb upstream 6392 true chr5: 43266896-43273287 Medicago truncatula
Medtr5g098800 0.5kb upstream 0.5kb upstream 500 false chr5: 43266896-43267395 Medicago truncatula
Medtr5g098800 0.5kb downstream 0.5kb downstream 6392 true chr5: 43267396-43273787 Medicago truncatula
Medtr5g098800 0.5kb downstream 0.5kb downstream 500 false chr5: 43273288-43273787 Medicago truncatula
Medtr5g098800 1.0kb upstream 1.0kb upstream 6892 true chr5: 43266396-43273287 Medicago truncatula
Medtr5g098800 1.0kb upstream 1.0kb upstream 1000 false chr5: 43266396-43267395 Medicago truncatula
Medtr5g098800 1.0kb downstream 1.0kb downstream 6892 true chr5: 43267396-43274287 Medicago truncatula
Medtr5g098800 1.0kb downstream 1.0kb downstream 1000 false chr5: 43273288-43274287 Medicago truncatula
Medtr5g098800 2.0kb upstream 2.0kb upstream 7892 true chr5: 43265396-43273287 Medicago truncatula
Medtr5g098800 2.0kb upstream 2.0kb upstream 2000 false chr5: 43265396-43267395 Medicago truncatula
Medtr5g098800 2.0kb downstream 2.0kb downstream 7892 true chr5: 43267396-43275287 Medicago truncatula
Medtr5g098800 2.0kb downstream 2.0kb downstream 2000 false chr5: 43273288-43275287 Medicago truncatula
Medtr5g098800 5.0kb upstream 5.0kb upstream 10892 true chr5: 43262396-43273287 Medicago truncatula
Medtr5g098800 5.0kb upstream 5.0kb upstream 5000 false chr5: 43262396-43267395 Medicago truncatula
Medtr5g098800 5.0kb downstream 5.0kb downstream 10892 true chr5: 43267396-43278287 Medicago truncatula
Medtr5g098800 5.0kb downstream 5.0kb downstream 5000 false chr5: 43273288-43278287 Medicago truncatula
Medtr5g098800 10.0kb upstream 10.0kb upstream 15892 true chr5: 43257396-43273287 Medicago truncatula
Medtr5g098800 10.0kb upstream 10.0kb upstream 10000 false chr5: 43257396-43267395 Medicago truncatula
Medtr5g098800 10.0kb downstream 10.0kb downstream 15892 true chr5: 43267396-43283287 Medicago truncatula
Medtr5g098800 10.0kb downstream 10.0kb downstream 10000 false chr5: 43273288-43283287 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308564 5265 Fabidae View MSA
124062707 5270 Rosid View MSA
123737615 5271 Pentapetalae View MSA
122790941 5272 Eudicot View MSA
122043250 5273 Angiosperm View MSA
121345223 5274 Embryophyte View MSA
123424727 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 110.595     High High
cufflinks 27.027     High  
cufflinks 18.207     High Low
cufflinks 45.089     High  
cufflinks 25.004     High  
cufflinks 18.127     High Low
cufflinks 62.856     High  
cufflinks 23.298     High  
cufflinks 73.005     High High

0 Strain