Gene : Medtr6g084700 M. truncatula Mt4.0v1
Defline:  (1 of 1) PTHR10742:SF246 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 1 Description:  lysine-specific histone demethylase-like protein
Genomic Order:  3455 Name:  ? Medtr6g084700
Secondary Identifier:  ? PAC:31103987
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Mtruncatula PWY-6441 Medicago truncatula pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g084700 0.5kb upstream 0.5kb upstream 3163 true chr6: 31822987-31826149 Medicago truncatula
Medtr6g084700 0.5kb upstream 0.5kb upstream 500 false chr6: 31825650-31826149 Medicago truncatula
Medtr6g084700 0.5kb downstream 0.5kb downstream 3163 true chr6: 31822487-31825649 Medicago truncatula
Medtr6g084700 0.5kb downstream 0.5kb downstream 500 false chr6: 31822487-31822986 Medicago truncatula
Medtr6g084700 1.0kb upstream 1.0kb upstream 3663 true chr6: 31822987-31826649 Medicago truncatula
Medtr6g084700 1.0kb upstream 1.0kb upstream 1000 false chr6: 31825650-31826649 Medicago truncatula
Medtr6g084700 1.0kb downstream 1.0kb downstream 3663 true chr6: 31821987-31825649 Medicago truncatula
Medtr6g084700 1.0kb downstream 1.0kb downstream 1000 false chr6: 31821987-31822986 Medicago truncatula
Medtr6g084700 2.0kb upstream 2.0kb upstream 4663 true chr6: 31822987-31827649 Medicago truncatula
Medtr6g084700 2.0kb upstream 2.0kb upstream 2000 false chr6: 31825650-31827649 Medicago truncatula
Medtr6g084700 2.0kb downstream 2.0kb downstream 4663 true chr6: 31820987-31825649 Medicago truncatula
Medtr6g084700 2.0kb downstream 2.0kb downstream 2000 false chr6: 31820987-31822986 Medicago truncatula
Medtr6g084700 5.0kb upstream 5.0kb upstream 7663 true chr6: 31822987-31830649 Medicago truncatula
Medtr6g084700 5.0kb upstream 5.0kb upstream 5000 false chr6: 31825650-31830649 Medicago truncatula
Medtr6g084700 5.0kb downstream 5.0kb downstream 7663 true chr6: 31817987-31825649 Medicago truncatula
Medtr6g084700 5.0kb downstream 5.0kb downstream 5000 false chr6: 31817987-31822986 Medicago truncatula
Medtr6g084700 10.0kb upstream 10.0kb upstream 12663 true chr6: 31822987-31835649 Medicago truncatula
Medtr6g084700 10.0kb upstream 10.0kb upstream 10000 false chr6: 31825650-31835649 Medicago truncatula
Medtr6g084700 10.0kb downstream 10.0kb downstream 12663 true chr6: 31812987-31825649 Medicago truncatula
Medtr6g084700 10.0kb downstream 10.0kb downstream 10000 false chr6: 31812987-31822986 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300219 5265 Fabidae View MSA
124062162 5270 Rosid View MSA
123738234 5271 Pentapetalae View MSA
122786001 5272 Eudicot View MSA
122043910 5273 Angiosperm View MSA
121310209 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.531        
cufflinks 4.737        
cufflinks 4.507        
cufflinks 3.372        
cufflinks 6.794       High
cufflinks 1.786       Low
cufflinks 2.294       Low
cufflinks 3.602        
cufflinks 3.889        

0 Strain