Gene : Medtr6g088010 M. truncatula Mt4.0v1
Defline:  (1 of 9) PTHR10535 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 Description:  DNA-directed RNA polymerase II
Genomic Order:  3610 Name:  ? Medtr6g088010
Secondary Identifier:  ? PAC:31101572
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Medtr6g088010 0.5kb upstream 0.5kb upstream 5332 true chr6: 33134110-33139441 Medicago truncatula
Medtr6g088010 0.5kb upstream 0.5kb upstream 500 false chr6: 33134110-33134609 Medicago truncatula
Medtr6g088010 0.5kb downstream 0.5kb downstream 5332 true chr6: 33134610-33139941 Medicago truncatula
Medtr6g088010 0.5kb downstream 0.5kb downstream 500 false chr6: 33139442-33139941 Medicago truncatula
Medtr6g088010 1.0kb upstream 1.0kb upstream 5832 true chr6: 33133610-33139441 Medicago truncatula
Medtr6g088010 1.0kb upstream 1.0kb upstream 1000 false chr6: 33133610-33134609 Medicago truncatula
Medtr6g088010 1.0kb downstream 1.0kb downstream 5832 true chr6: 33134610-33140441 Medicago truncatula
Medtr6g088010 1.0kb downstream 1.0kb downstream 1000 false chr6: 33139442-33140441 Medicago truncatula
Medtr6g088010 2.0kb upstream 2.0kb upstream 6832 true chr6: 33132610-33139441 Medicago truncatula
Medtr6g088010 2.0kb upstream 2.0kb upstream 2000 false chr6: 33132610-33134609 Medicago truncatula
Medtr6g088010 2.0kb downstream 2.0kb downstream 6832 true chr6: 33134610-33141441 Medicago truncatula
Medtr6g088010 2.0kb downstream 2.0kb downstream 2000 false chr6: 33139442-33141441 Medicago truncatula
Medtr6g088010 5.0kb upstream 5.0kb upstream 9832 true chr6: 33129610-33139441 Medicago truncatula
Medtr6g088010 5.0kb upstream 5.0kb upstream 5000 false chr6: 33129610-33134609 Medicago truncatula
Medtr6g088010 5.0kb downstream 5.0kb downstream 9832 true chr6: 33134610-33144441 Medicago truncatula
Medtr6g088010 5.0kb downstream 5.0kb downstream 5000 false chr6: 33139442-33144441 Medicago truncatula
Medtr6g088010 10.0kb upstream 10.0kb upstream 14832 true chr6: 33124610-33139441 Medicago truncatula
Medtr6g088010 10.0kb upstream 10.0kb upstream 10000 false chr6: 33124610-33134609 Medicago truncatula
Medtr6g088010 10.0kb downstream 10.0kb downstream 14832 true chr6: 33134610-33149441 Medicago truncatula
Medtr6g088010 10.0kb downstream 10.0kb downstream 10000 false chr6: 33139442-33149441 Medicago truncatula

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121783547 5273 Angiosperm View MSA
122295974 5265 Fabidae View MSA
124035411 5270 Rosid View MSA
123755184 5271 Pentapetalae View MSA
122776478 5272 Eudicot View MSA
121055000 5274 Embryophyte View MSA
123094950 5275 Viridiplantae View MSA

9 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.784        
cufflinks 0.614        
cufflinks 1.194        
cufflinks 0.338       Low
cufflinks 1.695       High
cufflinks 1.025        
cufflinks 1.012        
cufflinks 1.283        
cufflinks 0.909        

0 Strain